Variant report

Variant	rs797510
Chromosome Location	chr13:51282684-51282685
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs34311141	1.00[ASN][1000 genomes]
rs3851169	0.86[ASN][1000 genomes]
rs706594	0.80[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs706595	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs797502	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2753964	chr13:50545399-51421199	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1256 gene(s)	inside rSNPs	diseases
2	esv2753492	chr13:50550081-51461720	Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1256 gene(s)	inside rSNPs	diseases
3	esv2753864	chr13:51136699-51375199	Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1037350	chr13:51272518-51447354	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:51269400-51296800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr13:51272800-51285600	Weak transcription	Fetal Stomach	stomach
3	chr13:51277800-51283000	Enhancers	Fetal Thymus	thymus
4	chr13:51279600-51282800	Enhancers	Thymus	Thymus
5	chr13:51280000-51284200	Enhancers	Dnd41	blood
6	chr13:51280800-51283000	Enhancers	Fetal Muscle Leg	muscle
7	chr13:51281200-51282800	Enhancers	Primary B cells from cord blood	blood
8	chr13:51281600-51282800	Enhancers	Primary hematopoietic stem cells	blood
9	chr13:51281600-51282800	Enhancers	Primary hematopoietic stem cells short term culture	blood
10	chr13:51281600-51283800	Enhancers	Primary monocytes fromperipheralblood	blood
11	chr13:51281800-51282800	Enhancers	Brain Cingulate Gyrus	brain
12	chr13:51281800-51283000	Enhancers	Brain Hippocampus Middle	brain
13	chr13:51281800-51283600	Enhancers	Primary neutrophils fromperipheralblood	blood
14	chr13:51281800-51283600	Enhancers	Right Atrium	heart
15	chr13:51282000-51282800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr13:51282000-51283200	Enhancers	Brain Substantia Nigra	brain
17	chr13:51282200-51283000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr13:51282200-51283000	Enhancers	Brain Anterior Caudate	brain
19	chr13:51282400-51282800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr13:51282400-51282800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
21	chr13:51282400-51283000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr13:51282400-51283000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
23	chr13:51282400-51283000	Enhancers	Right Ventricle	heart
24	chr13:51282400-51286600	Weak transcription	HSMMtube	muscle
25	chr13:51282600-51282800	Enhancers	Brain Angular Gyrus	brain
26	chr13:51282600-51283400	Enhancers	Fetal Lung	lung
27	chr13:51282600-51287200	Weak transcription	Primary B cells from peripheral blood	blood
28	chr13:51282600-51287400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr13:51282600-51287400	Enhancers	Fetal Heart	heart

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