Variant report

Variant	rs3851444
Chromosome Location	chr5:41592109-41592110
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:41585351..41589024-chr5:41590720..41593383,4	K562	blood:
2	chr5:41585351..41588248-chr5:41591011..41592652,2	K562	blood:

Variant related genes	Relation type
ENSG00000251478	Chromatin interaction

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs13157238	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13165517	0.82[EUR][1000 genomes]
rs13174576	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13185010	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13186384	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17209303	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs33974812	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34191229	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34345464	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34672812	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs34858179	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35197184	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35263955	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35442331	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs36005067	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs36033285	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62360472	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62360485	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62360488	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62360490	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62360511	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62360512	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62360513	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs66460748	0.82[EUR][1000 genomes]
rs72758399	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv881563	chr5:41560079-41616100	Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	esv2753438	chr5:41571309-41600812	Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv462124	chr5:41585079-41596269	Weak transcription Bivalent/Poised TSS Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
4	nsv597880	chr5:41585079-41596269	Bivalent/Poised TSS Weak transcription Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
5	nsv881628	chr5:41585079-41600651	Enhancers Bivalent/Poised TSS ZNF genes & repeats Weak transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
6	esv3470450	chr5:41585589-41596580	ZNF genes & repeats Weak transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
7	esv3470451	chr5:41585589-41596580	ZNF genes & repeats Weak transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
8	nsv823059	chr5:41585612-41596478	Weak transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
9	nsv524669	chr5:41586405-41596269	Weak transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
10	nsv818349	chr5:41586405-41596269	Bivalent/Poised TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
11	esv1800641	chr5:41587271-41595104	Weak transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
12	nsv441952	chr5:41587271-41595104	ZNF genes & repeats Weak transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:41588000-41596400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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