Variant report

Variant	rs62360513
Chromosome Location	chr5:41598545-41598546
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs13157238	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13165517	0.82[EUR][1000 genomes]
rs13174576	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13185010	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13186384	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17209303	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs33974812	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34191229	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34345464	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34672812	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs34858179	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35197184	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35263955	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35442331	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs36005067	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs36033285	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs3851444	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62360472	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62360485	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62360488	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62360490	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62360511	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62360512	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs66460748	0.82[EUR][1000 genomes]
rs72758399	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv881563	chr5:41560079-41616100	Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	esv2753438	chr5:41571309-41600812	Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv881628	chr5:41585079-41600651	Enhancers Bivalent/Poised TSS ZNF genes & repeats Weak transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:41598400-41599000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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