Variant report

Variant	rs3851541
Chromosome Location	chr9:93960475-93960476
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:3)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:93959750..93961882-chr9:94121877..94124140,2	K562	blood:
2	chr9:93925433..93927172-chr9:93959426..93961046,2	K562	blood:
3	chr9:93954745..93957356-chr9:93959373..93965297,8	MCF-7	breast:
4	chr9:93959126..93960830-chr9:94186976..94189011,2	MCF-7	breast:
5	chr9:93959205..93961685-chr9:93970051..93972978,3	MCF-7	breast:

(count:3 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SYK-5	chr9:93960204-93961711	NONHSAT133124
2	lnc-SYK-5	chr9:93960437-93960591	NONHSAT133131
3	lnc-SYK-5	chr9:93960473-93961359	ucscGeneNc_uc004arq_1

No data

Variant related genes	Relation type
ENSG00000233081	Chromatin interaction
ENSG00000273381	Chromatin interaction

rs_ID	r²[population]
rs16907273	0.85[AFR][1000 genomes]
rs58493480	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59730602	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61581483	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]

Chromatin state (count:77 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:93956400-93961600	Enhancers	Fetal Intestine Large	intestine
2	chr9:93956400-93963200	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr9:93956600-93960600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr9:93956600-93960600	Enhancers	Fetal Muscle Leg	muscle
5	chr9:93956600-93961000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr9:93956600-93961200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr9:93956600-93961200	Enhancers	Fetal Lung	lung
8	chr9:93956600-93961200	Enhancers	NHDF-Ad	bronchial
9	chr9:93956600-93961400	Enhancers	Colon Smooth Muscle	Colon
10	chr9:93956600-93961400	Enhancers	Fetal Intestine Small	intestine
11	chr9:93956600-93962000	Weak transcription	Aorta	Aorta
12	chr9:93956600-93962600	Enhancers	Stomach Mucosa	stomach
13	chr9:93956800-93961400	Enhancers	NHLF	lung
14	chr9:93956800-93962400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr9:93956800-93962400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
16	chr9:93957000-93962400	Enhancers	Rectal Mucosa Donor 31	rectum
17	chr9:93957400-93961000	Enhancers	Skeletal Muscle Male	skeletal muscle
18	chr9:93957600-93962400	Enhancers	Skeletal Muscle Female	skeletal muscle
19	chr9:93957800-93961200	Enhancers	Adipose Nuclei	Adipose
20	chr9:93957800-93962000	Weak transcription	Primary B cells from peripheral blood	blood
21	chr9:93958000-93961200	Enhancers	Liver	Liver
22	chr9:93958200-93960800	Weak transcription	Primary hematopoietic stem cells	blood
23	chr9:93958200-93961000	Enhancers	Fetal Kidney	kidney
24	chr9:93958400-93960800	Enhancers	Muscle Satellite Cultured Cells	--
25	chr9:93958400-93961200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr9:93958600-93960800	Enhancers	Fetal Stomach	stomach
27	chr9:93958600-93961000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr9:93958600-93961000	Enhancers	Osteobl	bone
29	chr9:93958600-93961200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr9:93958600-93961400	Enhancers	HMEC	breast
31	chr9:93958600-93962400	Enhancers	K562	blood
32	chr9:93958800-93960600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr9:93958800-93961000	Enhancers	NHEK	skin
34	chr9:93959000-93960600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr9:93959000-93960800	Weak transcription	Right Atrium	heart
36	chr9:93959000-93960800	Weak transcription	Right Ventricle	heart
37	chr9:93959000-93960800	Weak transcription	Small Intestine	intestine
38	chr9:93959000-93961200	Enhancers	Rectal Smooth Muscle	rectum
39	chr9:93959000-93961800	Weak transcription	Psoas Muscle	Psoas
40	chr9:93959000-93962000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
41	chr9:93959200-93960600	Weak transcription	Fetal Muscle Trunk	muscle
42	chr9:93959200-93960800	Enhancers	Pancreatic Islets	Pancreatic Islet
43	chr9:93959200-93960800	Weak transcription	Pancreas	Pancrea
44	chr9:93959400-93961200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
45	chr9:93959600-93960600	Enhancers	Primary hematopoietic stem cells short term culture	blood
46	chr9:93959600-93961000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
47	chr9:93959600-93961000	Enhancers	HUES48 Cell Line	embryonic stem cell
48	chr9:93959600-93961400	Enhancers	ES-I3 Cell Line	embryonic stem cell
49	chr9:93959600-93963000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr9:93959800-93960600	Weak transcription	Duodenum Smooth Muscle	Duodenum

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