Variant report

Variant	rs16907273
Chromosome Location	chr9:93970365-93970366
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:6)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:93957714..93959439-chr9:93968900..93970567,2	MCF-7	breast:
2	chr9:93969893..93972438-chr9:93978667..93980846,2	K562	blood:
3	chr9:93970328..93972438-chr9:93979346..93981110,2	K562	blood:
4	chr9:93954809..93958074-chr9:93968864..93971962,3	MCF-7	breast:
5	chr9:93964083..93965933-chr9:93969852..93971912,2	K562	blood:
6	chr9:93964370..93966727-chr9:93969107..93971883,2	K562	blood:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-AUH-6	chr9:93968457-93972581	ENSG00000273381.1

No data

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs1022141	0.87[ASN][1000 genomes]
rs10512209	0.89[CHD][hapmap];0.90[MEX][hapmap]
rs10991842	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10991844	0.87[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10991845	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10991846	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10991847	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10991852	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10991854	0.87[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10991856	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10991857	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10991863	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10991867	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10991868	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10991871	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10991874	0.88[ASN][1000 genomes]
rs10991876	0.91[ASN][1000 genomes]
rs10991879	0.83[ASN][1000 genomes]
rs10991883	0.83[ASN][1000 genomes]
rs10991884	0.83[ASN][1000 genomes]
rs10991885	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.87[ASN][1000 genomes]
rs10991886	0.85[CEU][hapmap];1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs10991887	1.00[CHB][hapmap];0.84[JPT][hapmap];0.83[ASN][1000 genomes]
rs10991892	0.83[ASN][1000 genomes]
rs10991893	0.93[CHB][hapmap];0.84[JPT][hapmap];0.82[ASN][1000 genomes]
rs10991894	1.00[CHB][hapmap];0.90[JPT][hapmap];0.82[ASN][1000 genomes]
rs10991895	0.81[ASN][1000 genomes]
rs10991896	0.84[ASN][1000 genomes]
rs10991897	1.00[CHB][hapmap];0.84[JPT][hapmap];0.84[ASN][1000 genomes]
rs10991901	0.87[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];0.85[JPT][hapmap];1.00[MEX][hapmap];0.84[TSI][hapmap];0.84[ASN][1000 genomes]
rs10991903	0.84[ASN][1000 genomes]
rs10991904	0.87[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];0.85[JPT][hapmap];1.00[MEX][hapmap];0.84[TSI][hapmap];0.84[ASN][1000 genomes]
rs10991906	0.87[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];0.85[JPT][hapmap];1.00[MEX][hapmap];0.84[TSI][hapmap];0.84[ASN][1000 genomes]
rs12238387	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16907269	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16907280	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16907311	0.87[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16907384	0.83[ASN][1000 genomes]
rs2281922	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2292365	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28412258	0.83[EUR][1000 genomes]
rs35278373	0.86[EUR][1000 genomes]
rs3811122	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3811124	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3851541	0.85[AFR][1000 genomes]
rs4430195	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4537426	0.92[ASN][1000 genomes]
rs57342203	0.85[EUR][1000 genomes]
rs58493480	0.80[AFR][1000 genomes]
rs59730602	0.85[AFR][1000 genomes]
rs61581483	0.80[AFR][1000 genomes]
rs7868771	0.87[CEU][hapmap]

No data

Chromatin state (count:96 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:93961200-93975600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr9:93968600-93971400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr9:93968800-93970400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr9:93968800-93970400	Enhancers	NHEK	skin
5	chr9:93968800-93971000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr9:93969200-93971000	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr9:93969200-93971400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr9:93969200-93971400	Enhancers	Fetal Intestine Large	intestine
9	chr9:93969400-93970400	Enhancers	NHLF	lung
10	chr9:93969400-93970800	Enhancers	HSMMtube	muscle
11	chr9:93969400-93971200	Enhancers	Primary T helper naive cells from peripheral blood	blood
12	chr9:93969400-93971400	Enhancers	Placenta	Placenta
13	chr9:93969400-93971600	Enhancers	Sigmoid Colon	Sigmoid Colon
14	chr9:93969400-93971800	Enhancers	Primary B cells from peripheral blood	blood
15	chr9:93969400-93972200	Enhancers	Primary monocytes fromperipheralblood	blood
16	chr9:93969600-93970400	Enhancers	Aorta	Aorta
17	chr9:93969600-93970400	Enhancers	Fetal Thymus	thymus
18	chr9:93969600-93970600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
19	chr9:93969600-93970600	Enhancers	Adipose Nuclei	Adipose
20	chr9:93969600-93970800	Enhancers	Brain Angular Gyrus	brain
21	chr9:93969600-93970800	Enhancers	HMEC	breast
22	chr9:93969600-93971000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr9:93969600-93971000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr9:93969600-93971000	Enhancers	Primary T helper cells fromperipheralblood	blood
25	chr9:93969600-93971000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr9:93969600-93971000	Flanking Active TSS	Liver	Liver
27	chr9:93969600-93971000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
28	chr9:93969600-93971000	Enhancers	Fetal Heart	heart
29	chr9:93969600-93971200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
30	chr9:93969600-93971200	Enhancers	Fetal Lung	lung
31	chr9:93969600-93971400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr9:93969600-93971400	Enhancers	Primary neutrophils fromperipheralblood	blood
33	chr9:93969600-93971400	Enhancers	Primary T cells fromperipheralblood	blood
34	chr9:93969600-93971400	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
35	chr9:93969600-93971400	Enhancers	Esophagus	oesophagus
36	chr9:93969600-93971400	Enhancers	Fetal Intestine Small	intestine
37	chr9:93969600-93971400	Enhancers	Left Ventricle	heart
38	chr9:93969600-93971400	Enhancers	Lung	lung
39	chr9:93969600-93971400	Enhancers	Right Ventricle	heart
40	chr9:93969600-93971400	Enhancers	Small Intestine	intestine
41	chr9:93969600-93971400	Enhancers	Spleen	Spleen
42	chr9:93969600-93971400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
43	chr9:93969600-93971600	Enhancers	Psoas Muscle	Psoas
44	chr9:93969600-93971600	Enhancers	Right Atrium	heart
45	chr9:93969600-93971800	Enhancers	Stomach Mucosa	stomach
46	chr9:93969600-93974200	Enhancers	Pancreas	Pancrea
47	chr9:93969800-93970400	Enhancers	Pancreatic Islets	Pancreatic Islet
48	chr9:93969800-93970600	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
49	chr9:93969800-93970600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
50	chr9:93969800-93970600	Enhancers	Rectal Smooth Muscle	rectum

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