Variant report

Variant	rs10991857
Chromosome Location	chr9:94028899-94028900
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:94022525..94024830-chr9:94026758..94029257,2	MCF-7	breast:

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs1022141	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10991842	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10991844	1.00[CHB][hapmap];0.81[JPT][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10991845	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10991846	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10991847	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10991852	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10991853	0.82[JPT][hapmap]
rs10991854	1.00[CHB][hapmap];0.81[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10991856	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10991863	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10991867	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10991868	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10991871	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10991874	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10991876	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10991879	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10991883	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10991884	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10991885	1.00[CHB][hapmap];0.81[JPT][hapmap];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10991886	1.00[CHB][hapmap];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10991887	1.00[CHB][hapmap];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10991892	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10991893	0.93[CHB][hapmap];0.86[ASN][1000 genomes]
rs10991894	1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs10991895	0.85[ASN][1000 genomes]
rs10991896	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10991897	1.00[CHB][hapmap];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10991901	1.00[CHB][hapmap];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10991903	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10991904	1.00[CHB][hapmap];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10991906	1.00[CHB][hapmap];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12238387	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16907269	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16907273	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16907280	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16907311	1.00[CHB][hapmap];0.81[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16907384	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2281922	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2292365	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3811122	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3811124	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4430195	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4537426	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893570	chr9:93973938-94148084	Enhancers Genic enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv482877	chr9:93979351-94157734	Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:93982800-94032400	Weak transcription	Ovary	ovary
2	chr9:93983000-94054000	Weak transcription	Primary hematopoietic stem cells	blood
3	chr9:93984000-94052200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr9:93984000-94054600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr9:93995800-94052400	Weak transcription	Fetal Stomach	stomach
6	chr9:94002800-94032600	Weak transcription	Placenta	Placenta
7	chr9:94004600-94051800	Weak transcription	Liver	Liver
8	chr9:94008600-94036200	Weak transcription	HSMM	muscle
9	chr9:94010000-94031600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr9:94011400-94055400	Weak transcription	Brain Cingulate Gyrus	brain
11	chr9:94016000-94030400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
12	chr9:94019000-94032400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr9:94019000-94032400	Weak transcription	Fetal Brain Male	brain
14	chr9:94019000-94034800	Weak transcription	Fetal Lung	lung
15	chr9:94019000-94036600	Weak transcription	NHDF-Ad	bronchial
16	chr9:94019000-94056600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr9:94019200-94037000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr9:94019200-94037400	Weak transcription	Psoas Muscle	Psoas
19	chr9:94019200-94040200	Weak transcription	Gastric	stomach
20	chr9:94019200-94059200	Weak transcription	Spleen	Spleen
21	chr9:94019400-94031600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr9:94019400-94053400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
23	chr9:94019400-94068200	Weak transcription	Right Ventricle	heart
24	chr9:94019800-94044000	Weak transcription	Left Ventricle	heart
25	chr9:94023800-94048400	Weak transcription	Brain Hippocampus Middle	brain
26	chr9:94024200-94034800	Weak transcription	Fetal Heart	heart
27	chr9:94024200-94054800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr9:94024400-94048000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr9:94024400-94054600	Weak transcription	Primary B cells from cord blood	blood
30	chr9:94024800-94044600	Weak transcription	HepG2	liver
31	chr9:94024800-94059400	Weak transcription	Pancreas	Pancrea
32	chr9:94026000-94054000	Weak transcription	Primary T cells fromperipheralblood	blood
33	chr9:94026800-94046800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr9:94027000-94029400	Weak transcription	Primary T cells from cord blood	blood
35	chr9:94027000-94055000	Weak transcription	Primary B cells from peripheral blood	blood
36	chr9:94027200-94029200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr9:94028200-94029200	Weak transcription	Fetal Intestine Large	intestine
38	chr9:94028200-94029200	Weak transcription	Fetal Intestine Small	intestine
39	chr9:94028200-94053400	Weak transcription	Primary T helper cells fromperipheralblood	blood
40	chr9:94028600-94037800	Weak transcription	Fetal Kidney	kidney

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links