Variant report

Variant	rs10991842
Chromosome Location	chr9:94015440-94015441
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:94010552..94013353-chr9:94014239..94017543,3	K562	blood:

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs1022141	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10991844	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10991845	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10991846	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10991847	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10991852	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10991854	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10991856	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10991857	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10991863	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10991867	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10991868	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10991871	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10991874	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10991876	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10991879	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10991883	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10991884	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10991885	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10991886	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10991887	1.00[CHB][hapmap];0.85[JPT][hapmap];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10991892	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10991893	0.82[CEU][hapmap];0.93[CHB][hapmap];0.85[JPT][hapmap];0.86[ASN][1000 genomes]
rs10991894	0.87[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.83[ASN][1000 genomes]
rs10991895	0.85[ASN][1000 genomes]
rs10991896	0.85[CEU][hapmap];0.85[JPT][hapmap];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10991897	0.82[CEU][hapmap];1.00[CHB][hapmap];0.84[JPT][hapmap];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10991901	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10991903	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10991904	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10991906	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12238387	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16907269	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16907273	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16907280	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16907311	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16907384	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2281922	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2292365	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3811122	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3811124	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4430195	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4537426	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7868771	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893570	chr9:93973938-94148084	Enhancers Genic enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv482877	chr9:93979351-94157734	Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:93982800-94032400	Weak transcription	Ovary	ovary
2	chr9:93983000-94027000	Weak transcription	Fetal Intestine Large	intestine
3	chr9:93983000-94054000	Weak transcription	Primary hematopoietic stem cells	blood
4	chr9:93983200-94015800	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr9:93983200-94027800	Weak transcription	Adipose Nuclei	Adipose
6	chr9:93984000-94052200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr9:93984000-94054600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr9:93984200-94024000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr9:93984400-94026200	Weak transcription	Primary T cells from cord blood	blood
10	chr9:93995800-94018600	Weak transcription	Fetal Intestine Small	intestine
11	chr9:93995800-94052400	Weak transcription	Fetal Stomach	stomach
12	chr9:93999200-94015800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chr9:94002800-94032600	Weak transcription	Placenta	Placenta
14	chr9:94004600-94051800	Weak transcription	Liver	Liver
15	chr9:94006000-94015800	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr9:94008400-94018600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
17	chr9:94008400-94018600	Weak transcription	Esophagus	oesophagus
18	chr9:94008600-94036200	Weak transcription	HSMM	muscle
19	chr9:94008800-94017800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr9:94009400-94017000	Weak transcription	NHDF-Ad	bronchial
21	chr9:94009400-94022400	Weak transcription	Fetal Brain Female	brain
22	chr9:94009600-94020400	Weak transcription	Placenta Amnion	Placenta Amnion
23	chr9:94009800-94018600	Weak transcription	Lung	lung
24	chr9:94009800-94018600	Weak transcription	Pancreas	Pancrea
25	chr9:94009800-94018800	Weak transcription	Right Ventricle	heart
26	chr9:94010000-94021600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
27	chr9:94010000-94031600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
28	chr9:94011400-94055400	Weak transcription	Brain Cingulate Gyrus	brain
29	chr9:94011600-94015800	Weak transcription	Left Ventricle	heart
30	chr9:94011600-94018600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr9:94011600-94018600	Weak transcription	Right Atrium	heart
32	chr9:94011600-94019600	Weak transcription	Fetal Muscle Trunk	muscle
33	chr9:94013200-94018600	Weak transcription	Fetal Muscle Leg	muscle
34	chr9:94013400-94015800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
35	chr9:94013400-94016400	Weak transcription	Psoas Muscle	Psoas
36	chr9:94013600-94017000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr9:94013600-94018800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
38	chr9:94013800-94016600	Weak transcription	Skeletal Muscle Male	skeletal muscle
39	chr9:94014000-94018400	Weak transcription	Skeletal Muscle Female	skeletal muscle
40	chr9:94014000-94018800	Weak transcription	Duodenum Smooth Muscle	Duodenum
41	chr9:94014200-94016000	Weak transcription	HepG2	liver
42	chr9:94014800-94015800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr9:94015200-94016600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
44	chr9:94015400-94015800	Enhancers	Primary T killer memory cells from peripheral blood	blood
45	chr9:94015400-94020200	Enhancers	Fetal Heart	heart

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