Variant report

Variant	rs2281922
Chromosome Location	chr9:93982899-93982900
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs1022141	1.00[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs10512209	1.00[AFR][1000 genomes]
rs10991842	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10991844	0.87[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10991845	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10991846	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10991847	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10991852	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10991854	0.87[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10991856	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10991857	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10991863	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10991867	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10991868	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10991871	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10991874	1.00[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs10991876	1.00[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs10991879	0.83[ASN][1000 genomes]
rs10991883	1.00[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs10991884	1.00[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs10991885	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs10991886	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs10991887	1.00[CHB][hapmap];0.80[JPT][hapmap];1.00[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs10991892	1.00[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs10991893	0.93[CHB][hapmap];0.80[JPT][hapmap];1.00[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs10991894	1.00[CHB][hapmap];0.85[JPT][hapmap];1.00[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs10991895	1.00[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs10991896	1.00[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs10991897	1.00[CHB][hapmap];1.00[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs10991901	0.87[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];1.00[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs10991903	1.00[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs10991904	0.87[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];1.00[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs10991906	0.87[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];1.00[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs12238387	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16907250	1.00[AFR][1000 genomes]
rs16907269	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16907273	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16907280	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16907293	1.00[AFR][1000 genomes]
rs16907311	0.87[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16907384	1.00[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs2292365	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28412258	0.83[EUR][1000 genomes]
rs35278373	0.86[EUR][1000 genomes]
rs3811122	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3811124	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3851540	1.00[AFR][1000 genomes]
rs4430195	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4537426	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs57342203	0.85[EUR][1000 genomes]
rs7868771	0.87[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893570	chr9:93973938-94148084	Enhancers Genic enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv482877	chr9:93979351-94157734	Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:102 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:93970200-93984000	Weak transcription	K562	blood
2	chr9:93970400-94005400	Weak transcription	Aorta	Aorta
3	chr9:93970800-93983600	Weak transcription	Brain Substantia Nigra	brain
4	chr9:93970800-93983800	Weak transcription	Brain Angular Gyrus	brain
5	chr9:93970800-93984200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr9:93970800-93985200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr9:93971000-93983200	Weak transcription	Colon Smooth Muscle	Colon
8	chr9:93971000-93984200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
9	chr9:93971000-94007800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr9:93971200-93983800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
11	chr9:93971400-93983800	Weak transcription	Dnd41	blood
12	chr9:93971400-93984200	Weak transcription	Primary neutrophils fromperipheralblood	blood
13	chr9:93971400-93984400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
14	chr9:93971400-94009400	Weak transcription	Spleen	Spleen
15	chr9:93971600-93983200	Weak transcription	Brain Anterior Caudate	brain
16	chr9:93971600-93983800	Weak transcription	Psoas Muscle	Psoas
17	chr9:93971800-94008000	Weak transcription	Primary B cells from peripheral blood	blood
18	chr9:93972800-94009200	Weak transcription	Brain Germinal Matrix	brain
19	chr9:93973000-93984000	Weak transcription	Fetal Brain Male	brain
20	chr9:93973000-93984600	Weak transcription	Small Intestine	intestine
21	chr9:93973600-93995800	Weak transcription	Fetal Brain Female	brain
22	chr9:93974800-93983400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr9:93974800-93983800	Weak transcription	A549	lung
24	chr9:93975000-93983800	Weak transcription	Rectal Smooth Muscle	rectum
25	chr9:93975200-93983000	Weak transcription	Colonic Mucosa	Colon
26	chr9:93975400-93985000	Weak transcription	Pancreatic Islets	Pancreatic Islet
27	chr9:93975800-93983800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
28	chr9:93975800-94005000	Weak transcription	Fetal Kidney	kidney
29	chr9:93976000-94002000	Weak transcription	Gastric	stomach
30	chr9:93977000-93983800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr9:93977200-93984400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr9:93977400-93983000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr9:93977400-93985400	Weak transcription	Hela-S3	cervix
34	chr9:93977600-93983800	Weak transcription	NHLF	lung
35	chr9:93979200-93983000	Strong transcription	Duodenum Mucosa	Duodenum
36	chr9:93979200-93995400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
37	chr9:93979600-93983200	Strong transcription	Fetal Muscle Trunk	muscle
38	chr9:93979800-93983200	Strong transcription	Liver	Liver
39	chr9:93979800-93984000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
40	chr9:93979800-93984400	Strong transcription	Primary T cells from cord blood	blood
41	chr9:93980200-93983200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
42	chr9:93980200-93984000	Weak transcription	H9 Cell Line	embryonic stem cell
43	chr9:93980200-93984400	Weak transcription	HUES6 Cell Line	embryonic stem cell
44	chr9:93980200-93994400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
45	chr9:93980400-93985400	Weak transcription	H1 Cell Line	embryonic stem cell
46	chr9:93980600-93983000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
47	chr9:93980600-93984200	Weak transcription	Fetal Thymus	thymus
48	chr9:93980600-94007600	Weak transcription	Primary B cells from cord blood	blood
49	chr9:93980800-93983000	Strong transcription	Stomach Smooth Muscle	stomach
50	chr9:93980800-93983200	Strong transcription	HUES48 Cell Line	embryonic stem cell

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