Variant report

Variant	rs10991892
Chromosome Location	chr9:94102162-94102163
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:94097644..94101149-chr9:94101391..94105187,4	K562	blood:
2	chr9:94096260..94098366-chr9:94101881..94104584,2	MCF-7	breast:
3	chr9:94094684..94097540-chr9:94102093..94106003,3	K562	blood:

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs1022141	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10512209	1.00[ASW][hapmap];0.87[CHD][hapmap];0.90[MEX][hapmap];1.00[AFR][1000 genomes]
rs10991842	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10991844	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];1.00[AFR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10991845	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10991846	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10991847	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10991852	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10991854	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];1.00[AFR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10991856	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10991857	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10991863	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10991867	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10991868	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10991871	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10991874	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10991876	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10991879	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10991883	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10991884	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10991885	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10991886	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10991887	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10991893	0.82[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10991894	0.87[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10991895	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10991896	0.85[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10991897	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10991901	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.84[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10991903	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10991904	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.84[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10991906	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.84[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10991921	0.80[JPT][hapmap]
rs12238387	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs16907250	1.00[AFR][1000 genomes]
rs16907269	0.83[ASN][1000 genomes]
rs16907273	0.83[ASN][1000 genomes]
rs16907280	1.00[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs16907293	1.00[AFR][1000 genomes]
rs16907311	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];1.00[AFR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs16907384	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16907447	0.80[JPT][hapmap]
rs2281922	1.00[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs2292365	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3811122	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3811124	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3851540	1.00[AFR][1000 genomes]
rs4430195	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4537426	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7868771	1.00[CEU][hapmap];0.85[JPT][hapmap];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893570	chr9:93973938-94148084	Enhancers Genic enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv482877	chr9:93979351-94157734	Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv893571	chr9:94072113-94202927	Genic enhancers Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:94052000-94119200	Weak transcription	Small Intestine	intestine
2	chr9:94053400-94103800	Weak transcription	HSMMtube	muscle
3	chr9:94059600-94103400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr9:94066400-94103400	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr9:94066800-94104000	Weak transcription	HSMM	muscle
6	chr9:94074600-94103800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr9:94075800-94104200	Weak transcription	NHEK	skin
8	chr9:94080800-94102400	Weak transcription	Colonic Mucosa	Colon
9	chr9:94082200-94104000	Weak transcription	Primary neutrophils fromperipheralblood	blood
10	chr9:94084400-94104200	Weak transcription	NHDF-Ad	bronchial
11	chr9:94087800-94103600	Weak transcription	A549	lung
12	chr9:94090000-94103400	Weak transcription	Brain Angular Gyrus	brain
13	chr9:94090200-94104000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr9:94090200-94106200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr9:94090400-94103400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr9:94090400-94103400	Weak transcription	Gastric	stomach
17	chr9:94090400-94104000	Weak transcription	NHLF	lung
18	chr9:94090400-94104200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr9:94090400-94104200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr9:94090400-94104200	Weak transcription	Aorta	Aorta
21	chr9:94090400-94104200	Weak transcription	Brain Inferior Temporal Lobe	brain
22	chr9:94090400-94104200	Weak transcription	Esophagus	oesophagus
23	chr9:94090600-94103200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
24	chr9:94090600-94103200	Weak transcription	Fetal Thymus	thymus
25	chr9:94090600-94103400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr9:94090600-94103400	Weak transcription	Spleen	Spleen
27	chr9:94090600-94104000	Weak transcription	Ovary	ovary
28	chr9:94090600-94108400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
29	chr9:94090600-94109400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr9:94090800-94103600	Weak transcription	Brain Substantia Nigra	brain
31	chr9:94091000-94103000	Weak transcription	Fetal Muscle Leg	muscle
32	chr9:94091800-94103600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
33	chr9:94091800-94103600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr9:94092000-94104200	Weak transcription	Osteobl	bone
35	chr9:94093200-94122600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
36	chr9:94094800-94104200	Weak transcription	GM12878-XiMat	blood
37	chr9:94095400-94104000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
38	chr9:94095400-94104200	Weak transcription	Right Ventricle	heart
39	chr9:94095600-94103400	Weak transcription	Skeletal Muscle Male	skeletal muscle
40	chr9:94096600-94103600	Weak transcription	Fetal Heart	heart
41	chr9:94096800-94102400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr9:94096800-94103000	Weak transcription	Placenta Amnion	Placenta Amnion
43	chr9:94096800-94103400	Weak transcription	Pancreas	Pancrea
44	chr9:94096800-94103400	Weak transcription	Right Atrium	heart
45	chr9:94096800-94103400	Weak transcription	Skeletal Muscle Female	skeletal muscle
46	chr9:94096800-94104000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
47	chr9:94096800-94104200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
48	chr9:94096800-94104200	Weak transcription	Lung	lung
49	chr9:94097800-94121600	Weak transcription	Cortex derived primary cultured neurospheres	brain
50	chr9:94098000-94103800	Weak transcription	Pancreatic Islets	Pancreatic Islet

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