Variant report

Variant	rs10991886
Chromosome Location	chr9:94092471-94092472
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:94083958..94087680-chr9:94091531..94093871,3	K562	blood:
2	chr9:94091971..94094029-chr9:94123671..94125803,2	K562	blood:
3	chr9:94091443..94093670-chr9:94185813..94187778,2	K562	blood:
4	chr9:94092063..94094216-chr9:94095071..94096917,2	MCF-7	breast:
5	chr9:94083958..94089590-chr9:94090031..94094657,6	K562	blood:

Variant related genes	Relation type
ENSG00000148090	Chromatin interaction
ENSG00000165030	Chromatin interaction

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs1022141	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10512209	1.00[AFR][1000 genomes]
rs10991842	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10991844	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10991845	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10991846	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10991847	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10991852	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10991854	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10991856	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10991857	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10991863	1.00[AFR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10991867	1.00[AFR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10991868	1.00[AFR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10991871	1.00[AFR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10991874	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10991876	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10991879	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10991883	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10991884	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10991885	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10991887	1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10991892	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10991893	0.93[CHB][hapmap];0.94[JPT][hapmap];1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10991894	0.85[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs10991895	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs10991896	0.82[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10991897	0.82[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10991901	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10991903	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10991904	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10991906	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12238387	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs16907250	1.00[AFR][1000 genomes]
rs16907269	0.83[ASN][1000 genomes]
rs16907273	0.83[ASN][1000 genomes]
rs16907280	1.00[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs16907293	1.00[AFR][1000 genomes]
rs16907311	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs16907384	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2281922	1.00[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs2292365	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3811122	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3811124	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3851540	1.00[AFR][1000 genomes]
rs4430195	1.00[AFR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4537426	1.00[AFR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7868771	1.00[CEU][hapmap];0.81[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893570	chr9:93973938-94148084	Enhancers Genic enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv482877	chr9:93979351-94157734	Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv893571	chr9:94072113-94202927	Genic enhancers Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:99 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:94033800-94096400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr9:94052000-94119200	Weak transcription	Small Intestine	intestine
3	chr9:94053400-94103800	Weak transcription	HSMMtube	muscle
4	chr9:94059600-94103400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr9:94059800-94101400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
6	chr9:94065400-94101400	Weak transcription	K562	blood
7	chr9:94065600-94102000	Weak transcription	Hela-S3	cervix
8	chr9:94066400-94103400	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr9:94066800-94104000	Weak transcription	HSMM	muscle
10	chr9:94067800-94094400	Weak transcription	Colon Smooth Muscle	Colon
11	chr9:94069200-94096200	Weak transcription	Psoas Muscle	Psoas
12	chr9:94072800-94101200	Weak transcription	Primary T helper cells PMA-I stimulated	--
13	chr9:94074600-94103800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
14	chr9:94075800-94104200	Weak transcription	NHEK	skin
15	chr9:94080800-94101000	Weak transcription	Fetal Kidney	kidney
16	chr9:94080800-94102400	Weak transcription	Colonic Mucosa	Colon
17	chr9:94081000-94101000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
18	chr9:94082200-94094800	Weak transcription	Fetal Heart	heart
19	chr9:94082200-94095000	Weak transcription	Placenta Amnion	Placenta Amnion
20	chr9:94082200-94104000	Weak transcription	Primary neutrophils fromperipheralblood	blood
21	chr9:94084400-94104200	Weak transcription	NHDF-Ad	bronchial
22	chr9:94087800-94103600	Weak transcription	A549	lung
23	chr9:94088200-94092600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr9:94088600-94099800	Weak transcription	Sigmoid Colon	Sigmoid Colon
25	chr9:94089200-94093600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr9:94089200-94093800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr9:94089200-94095000	Weak transcription	Stomach Mucosa	stomach
28	chr9:94089400-94093800	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
29	chr9:94090000-94092800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr9:94090000-94095000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr9:94090000-94103400	Weak transcription	Brain Angular Gyrus	brain
32	chr9:94090200-94094800	Weak transcription	Right Ventricle	heart
33	chr9:94090200-94095000	Weak transcription	Duodenum Smooth Muscle	Duodenum
34	chr9:94090200-94099600	Weak transcription	Stomach Smooth Muscle	stomach
35	chr9:94090200-94101400	Weak transcription	Brain Cingulate Gyrus	brain
36	chr9:94090200-94104000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr9:94090200-94106200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
38	chr9:94090400-94094800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
39	chr9:94090400-94095000	Weak transcription	Lung	lung
40	chr9:94090400-94095000	Weak transcription	Pancreas	Pancrea
41	chr9:94090400-94095200	Weak transcription	Skeletal Muscle Male	skeletal muscle
42	chr9:94090400-94096400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
43	chr9:94090400-94099400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr9:94090400-94099600	Weak transcription	Primary T cells fromperipheralblood	blood
45	chr9:94090400-94100600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
46	chr9:94090400-94101000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
47	chr9:94090400-94101400	Weak transcription	Brain Anterior Caudate	brain
48	chr9:94090400-94101400	Weak transcription	Rectal Mucosa Donor 31	rectum
49	chr9:94090400-94103400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
50	chr9:94090400-94103400	Weak transcription	Gastric	stomach

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