Variant report

Variant	rs10991901
Chromosome Location	chr9:94120095-94120096
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	NFYB	chr9:94119971-94120178	GM12878	blood:	n/a	chr9:94120105-94120117 chr9:94120106-94120120

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:94113397..94115728-chr9:94119035..94121876,2	MCF-7	breast:
2	chr9:94119074..94121011-chr9:94185358..94187790,2	MCF-7	breast:

Variant related genes	Relation type
AUH	TF binding region
ENSG00000165030	Chromatin interaction

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs1022141	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10512209	1.00[ASW][hapmap];0.86[CHD][hapmap];0.90[MEX][hapmap];1.00[AFR][1000 genomes]
rs10991842	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10991844	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];1.00[AFR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10991845	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10991846	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10991847	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10991852	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10991854	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];1.00[AFR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10991856	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10991857	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10991863	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10991867	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10991868	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10991871	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10991874	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10991876	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10991879	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10991883	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10991884	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10991885	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10991886	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10991887	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10991892	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10991893	0.82[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10991894	0.87[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10991895	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10991896	0.85[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10991897	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10991903	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10991904	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10991906	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10991921	0.80[JPT][hapmap]
rs12238387	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16907250	1.00[AFR][1000 genomes]
rs16907269	0.84[ASN][1000 genomes]
rs16907273	0.84[ASN][1000 genomes]
rs16907280	1.00[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs16907293	1.00[AFR][1000 genomes]
rs16907311	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];1.00[AFR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16907384	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16907447	0.80[JPT][hapmap]
rs2281922	1.00[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs2292365	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3811122	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3811124	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3851540	1.00[AFR][1000 genomes]
rs4430195	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4537426	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7868771	1.00[CEU][hapmap];0.85[JPT][hapmap];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893570	chr9:93973938-94148084	Enhancers Genic enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv482877	chr9:93979351-94157734	Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv893571	chr9:94072113-94202927	Genic enhancers Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:94093200-94122600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr9:94097800-94121600	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr9:94101000-94122400	Weak transcription	HUVEC	blood vessel
4	chr9:94102000-94122400	Weak transcription	HMEC	breast
5	chr9:94104400-94122800	Weak transcription	Colonic Mucosa	Colon
6	chr9:94104600-94121200	Weak transcription	Brain Cingulate Gyrus	brain
7	chr9:94104600-94121400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
8	chr9:94104600-94122000	Weak transcription	Gastric	stomach
9	chr9:94104800-94121200	Weak transcription	Brain Anterior Caudate	brain
10	chr9:94104800-94121400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
11	chr9:94104800-94121400	Weak transcription	Brain Substantia Nigra	brain
12	chr9:94104800-94121800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
13	chr9:94104800-94122000	Weak transcription	Spleen	Spleen
14	chr9:94104800-94122400	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr9:94104800-94122400	Weak transcription	NHLF	lung
16	chr9:94104800-94122600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr9:94104800-94122600	Weak transcription	Placenta Amnion	Placenta Amnion
18	chr9:94104800-94122600	Weak transcription	HSMMtube	muscle
19	chr9:94104800-94123600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr9:94105200-94120600	Weak transcription	Fetal Heart	heart
21	chr9:94105200-94121400	Weak transcription	Sigmoid Colon	Sigmoid Colon
22	chr9:94105200-94121800	Weak transcription	Fetal Brain Male	brain
23	chr9:94105200-94122600	Weak transcription	Osteobl	bone
24	chr9:94105200-94122800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr9:94105400-94122600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
26	chr9:94105600-94121000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
27	chr9:94105600-94123000	Weak transcription	Placenta	Placenta
28	chr9:94106400-94122800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr9:94108800-94122000	Weak transcription	H9 Cell Line	embryonic stem cell
30	chr9:94109800-94122600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
31	chr9:94109800-94123000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
32	chr9:94109800-94123000	Weak transcription	Esophagus	oesophagus
33	chr9:94110200-94122400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
34	chr9:94111200-94122000	Weak transcription	Pancreatic Islets	Pancreatic Islet
35	chr9:94112800-94122200	Strong transcription	HUES64 Cell Line	embryonic stem cell
36	chr9:94113200-94120200	Strong transcription	Liver	Liver
37	chr9:94113600-94122600	Weak transcription	NH-A	brain
38	chr9:94114000-94121800	Weak transcription	Pancreas	Pancrea
39	chr9:94114000-94122600	Weak transcription	Fetal Muscle Leg	muscle
40	chr9:94114200-94121800	Weak transcription	Brain Hippocampus Middle	brain
41	chr9:94114200-94122400	Weak transcription	Fetal Kidney	kidney
42	chr9:94114200-94122400	Weak transcription	A549	lung
43	chr9:94114200-94122600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr9:94114200-94122800	Weak transcription	Aorta	Aorta
45	chr9:94114400-94121800	Weak transcription	Thymus	Thymus
46	chr9:94114400-94122000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
47	chr9:94114400-94122000	Weak transcription	Rectal Smooth Muscle	rectum
48	chr9:94114400-94122400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
49	chr9:94114600-94120600	Weak transcription	Brain Angular Gyrus	brain
50	chr9:94114600-94121400	Weak transcription	Brain Inferior Temporal Lobe	brain

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