Variant report

Variant	rs10991921
Chromosome Location	chr9:94157846-94157847
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:94156029..94158769-chr9:94180110..94182946,2	K562	blood:
2	chr9:94156758..94159585-chr9:94185541..94188390,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000165030	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10991887	0.80[JPT][hapmap]
rs10991893	0.80[JPT][hapmap]
rs10991901	0.80[JPT][hapmap]
rs10991904	0.80[JPT][hapmap]
rs10991906	0.80[JPT][hapmap]
rs10991918	0.80[CEU][hapmap];0.97[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs10991919	0.98[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs12236817	0.89[CHB][hapmap];0.85[ASN][1000 genomes]
rs16907447	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16907449	0.98[AFR][1000 genomes]
rs4503207	0.83[AFR][1000 genomes]
rs7037297	0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7047662	0.91[CEU][hapmap];0.98[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs7856351	0.80[EUR][1000 genomes]
rs883121	0.85[AFR][1000 genomes]
rs914450	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893571	chr9:94072113-94202927	Genic enhancers Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv824980	chr9:94131502-94215911	Bivalent Enhancer Enhancers Bivalent/Poised TSS Active TSS Strong transcription Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:94156000-94160800	Weak transcription	Fetal Brain Male	brain
2	chr9:94156600-94158200	Enhancers	HepG2	liver
3	chr9:94156600-94159000	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr9:94156800-94158000	Enhancers	Liver	Liver
5	chr9:94156800-94158000	Enhancers	Fetal Intestine Large	intestine
6	chr9:94156800-94158800	Enhancers	Primary hematopoietic stem cells short term culture	blood
7	chr9:94157000-94158400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr9:94157000-94158400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr9:94157000-94158800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr9:94157000-94158800	Enhancers	Primary hematopoietic stem cells	blood
11	chr9:94157000-94159200	Enhancers	HMEC	breast
12	chr9:94157000-94159200	Enhancers	Osteobl	bone
13	chr9:94157000-94159400	Enhancers	Placenta	Placenta
14	chr9:94157200-94158000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
15	chr9:94157200-94158000	Enhancers	NHEK	skin
16	chr9:94157200-94158200	Enhancers	Hela-S3	cervix
17	chr9:94157200-94158200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
18	chr9:94157200-94158800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr9:94157200-94159000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr9:94157200-94159000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr9:94157200-94159000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr9:94157400-94158200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr9:94157400-94158200	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
24	chr9:94157400-94158200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr9:94157400-94158400	Enhancers	HSMMtube	muscle
26	chr9:94157400-94158800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr9:94157400-94158800	Enhancers	Placenta Amnion	Placenta Amnion
28	chr9:94157400-94158800	Enhancers	NHDF-Ad	bronchial
29	chr9:94157400-94159200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr9:94157400-94159200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr9:94157400-94159200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr9:94157400-94159200	Enhancers	HSMM	muscle
33	chr9:94157400-94159200	Enhancers	NHLF	lung
34	chr9:94157400-94159400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr9:94157600-94158000	Enhancers	Thymus	Thymus
36	chr9:94157600-94158200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
37	chr9:94157600-94158200	Enhancers	Duodenum Mucosa	Duodenum
38	chr9:94157600-94158200	Flanking Active TSS	GM12878-XiMat	blood
39	chr9:94157600-94158400	Enhancers	Primary B cells from cord blood	blood
40	chr9:94157600-94159000	Enhancers	HUVEC	blood vessel
41	chr9:94157800-94158000	Enhancers	Muscle Satellite Cultured Cells	--
42	chr9:94157800-94158200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
43	chr9:94157800-94158200	Flanking Active TSS	NH-A	brain
44	chr9:94157800-94158400	Enhancers	Primary T helper cells PMA-I stimulated	--
45	chr9:94157800-94158600	Enhancers	A549	lung

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