Variant report

Variant	rs10991918
Chromosome Location	chr9:94154282-94154283
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10820847	0.86[ASN][1000 genomes]
rs10991909	1.00[CHB][hapmap];0.83[CHD][hapmap];0.86[ASN][1000 genomes]
rs10991911	0.86[ASN][1000 genomes]
rs10991912	0.86[ASN][1000 genomes]
rs10991919	0.99[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10991920	0.91[ASN][1000 genomes]
rs10991921	0.80[CEU][hapmap];0.97[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs12236231	0.86[ASN][1000 genomes]
rs16907447	0.88[ASW][hapmap];0.89[CEU][hapmap];1.00[LWK][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs16907449	0.94[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes]
rs4503207	0.84[AFR][1000 genomes]
rs7037297	0.98[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs7047662	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs883121	0.82[AFR][1000 genomes]
rs914450	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv482877	chr9:93979351-94157734	Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv893571	chr9:94072113-94202927	Genic enhancers Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv824980	chr9:94131502-94215911	Bivalent Enhancer Enhancers Bivalent/Poised TSS Active TSS Strong transcription Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv818712	chr9:94148084-94154282	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:94149200-94156600	Weak transcription	HepG2	liver
2	chr9:94150200-94154400	Weak transcription	Stomach Mucosa	stomach
3	chr9:94153400-94154400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr9:94153400-94154400	Enhancers	NHDF-Ad	bronchial
5	chr9:94153400-94154400	Enhancers	Osteobl	bone
6	chr9:94153400-94154800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr9:94153600-94154400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr9:94153600-94156600	Weak transcription	Primary monocytes fromperipheralblood	blood
9	chr9:94153800-94154400	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr9:94154000-94156000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr9:94154000-94157400	Weak transcription	NHLF	lung
12	chr9:94154200-94156000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr9:94154200-94157200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr9:94154200-94157400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr9:94154200-94157400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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