Variant report

Variant	rs10820847
Chromosome Location	chr9:94141157-94141158
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10991860	1.00[AMR][1000 genomes]
rs10991865	1.00[AMR][1000 genomes]
rs10991878	1.00[AMR][1000 genomes]
rs10991902	1.00[AMR][1000 genomes]
rs10991909	1.00[ASN][1000 genomes]
rs10991911	1.00[ASN][1000 genomes]
rs10991912	1.00[ASN][1000 genomes]
rs10991918	0.86[ASN][1000 genomes]
rs10991919	0.86[ASN][1000 genomes]
rs10991920	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10991922	0.89[ASN][1000 genomes]
rs12236231	1.00[ASN][1000 genomes]
rs12236854	0.89[ASN][1000 genomes]
rs7047662	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893570	chr9:93973938-94148084	Enhancers Genic enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv482877	chr9:93979351-94157734	Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv893571	chr9:94072113-94202927	Genic enhancers Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
4	nsv824980	chr9:94131502-94215911	Bivalent Enhancer Enhancers Bivalent/Poised TSS Active TSS Strong transcription Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:94138800-94145200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr9:94139800-94142000	Enhancers	HUVEC	blood vessel
3	chr9:94140200-94142000	Enhancers	Placenta	Placenta
4	chr9:94140600-94141200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr9:94140600-94142000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr9:94140600-94142000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr9:94140600-94142000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr9:94140600-94142000	Enhancers	Adipose Nuclei	Adipose
9	chr9:94140800-94141200	Enhancers	NHDF-Ad	bronchial
10	chr9:94140800-94141200	Enhancers	Osteobl	bone
11	chr9:94140800-94141400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr9:94140800-94141400	Enhancers	Muscle Satellite Cultured Cells	--
13	chr9:94140800-94141400	Enhancers	Hela-S3	cervix
14	chr9:94140800-94141400	Enhancers	NH-A	brain
15	chr9:94140800-94141800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr9:94140800-94142000	Enhancers	Fetal Lung	lung
17	chr9:94141000-94141200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr9:94141000-94141400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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