Variant report

Variant	rs10991922
Chromosome Location	chr9:94163246-94163247
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10820847	0.89[ASN][1000 genomes]
rs10991909	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10991911	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10991912	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10991920	0.85[ASN][1000 genomes]
rs12236231	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12236854	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7047662	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893571	chr9:94072113-94202927	Genic enhancers Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv824980	chr9:94131502-94215911	Bivalent Enhancer Enhancers Bivalent/Poised TSS Active TSS Strong transcription Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:94158000-94165400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr9:94158000-94169800	Weak transcription	Liver	Liver
3	chr9:94158200-94168000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr9:94158200-94170000	Weak transcription	Duodenum Mucosa	Duodenum
5	chr9:94158200-94171400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
6	chr9:94158200-94171800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr9:94158400-94171400	Weak transcription	Primary T helper cells PMA-I stimulated	--
8	chr9:94158800-94167400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr9:94158800-94169000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr9:94158800-94169000	Weak transcription	NHDF-Ad	bronchial
11	chr9:94158800-94171800	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr9:94159000-94167800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr9:94159000-94168800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr9:94159000-94168800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr9:94159000-94169000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr9:94159000-94169800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr9:94159000-94171400	Weak transcription	HUVEC	blood vessel
18	chr9:94159000-94171400	Weak transcription	NH-A	brain
19	chr9:94159200-94169000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr9:94159200-94169800	Weak transcription	Osteobl	bone
21	chr9:94159200-94170000	Weak transcription	NHLF	lung
22	chr9:94159200-94170200	Weak transcription	Muscle Satellite Cultured Cells	--
23	chr9:94159200-94171400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr9:94159200-94171400	Weak transcription	HSMM	muscle
25	chr9:94159400-94166800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr9:94159400-94169800	Weak transcription	Placenta	Placenta
27	chr9:94161400-94170000	Weak transcription	Fetal Brain Female	brain
28	chr9:94161600-94170000	Weak transcription	Aorta	Aorta
29	chr9:94162000-94171400	Weak transcription	Fetal Brain Male	brain
30	chr9:94162400-94171800	Weak transcription	Spleen	Spleen
31	chr9:94162600-94169800	Weak transcription	Adipose Nuclei	Adipose
32	chr9:94162600-94171400	Weak transcription	Fetal Kidney	kidney

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