Variant report

Variant	rs10991920
Chromosome Location	chr9:94156470-94156471
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10820847	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10991860	1.00[AMR][1000 genomes]
rs10991865	1.00[AMR][1000 genomes]
rs10991878	1.00[AMR][1000 genomes]
rs10991902	1.00[AMR][1000 genomes]
rs10991909	0.95[ASN][1000 genomes]
rs10991911	0.95[ASN][1000 genomes]
rs10991912	0.95[ASN][1000 genomes]
rs10991918	0.91[ASN][1000 genomes]
rs10991919	0.91[ASN][1000 genomes]
rs10991922	0.85[ASN][1000 genomes]
rs12236231	0.95[ASN][1000 genomes]
rs12236854	0.85[ASN][1000 genomes]
rs7047662	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv482877	chr9:93979351-94157734	Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv893571	chr9:94072113-94202927	Genic enhancers Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv824980	chr9:94131502-94215911	Bivalent Enhancer Enhancers Bivalent/Poised TSS Active TSS Strong transcription Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:94149200-94156600	Weak transcription	HepG2	liver
2	chr9:94153600-94156600	Weak transcription	Primary monocytes fromperipheralblood	blood
3	chr9:94154000-94157400	Weak transcription	NHLF	lung
4	chr9:94154200-94157200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr9:94154200-94157400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr9:94154200-94157400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr9:94154400-94157000	Weak transcription	Osteobl	bone
8	chr9:94154400-94157200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr9:94154400-94157400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr9:94154400-94157400	Weak transcription	NHDF-Ad	bronchial
11	chr9:94154600-94157000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr9:94154800-94157200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr9:94155000-94156800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
14	chr9:94156000-94157400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr9:94156000-94157400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr9:94156000-94160800	Weak transcription	Fetal Brain Male	brain
17	chr9:94156200-94157400	Enhancers	Primary neutrophils fromperipheralblood	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links