Variant report

Variant	rs7047662
Chromosome Location	chr9:94157287-94157288
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:94156029..94158769-chr9:94180110..94182946,2	K562	blood:
2	chr9:94156758..94159585-chr9:94185541..94188390,4	MCF-7	breast:
3	chr9:94155980..94157529-chr9:94180110..94182915,2	K562	blood:

Variant related genes	Relation type
ENSG00000165030	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10820847	0.90[ASN][1000 genomes]
rs10991909	1.00[CHB][hapmap];0.90[ASN][1000 genomes]
rs10991911	0.90[ASN][1000 genomes]
rs10991912	0.90[ASN][1000 genomes]
rs10991918	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10991919	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10991920	0.85[ASN][1000 genomes]
rs10991921	0.91[CEU][hapmap];0.98[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs10991922	0.81[ASN][1000 genomes]
rs12236231	0.90[ASN][1000 genomes]
rs12236854	0.81[ASN][1000 genomes]
rs16907447	1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs16907449	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs4503207	0.85[AFR][1000 genomes]
rs4593679	0.80[AFR][1000 genomes]
rs7037297	0.97[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs883121	0.83[AFR][1000 genomes]
rs914450	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv482877	chr9:93979351-94157734	Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv893571	chr9:94072113-94202927	Genic enhancers Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv824980	chr9:94131502-94215911	Bivalent Enhancer Enhancers Bivalent/Poised TSS Active TSS Strong transcription Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:94154000-94157400	Weak transcription	NHLF	lung
2	chr9:94154200-94157400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr9:94154200-94157400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr9:94154400-94157400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr9:94154400-94157400	Weak transcription	NHDF-Ad	bronchial
6	chr9:94156000-94157400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr9:94156000-94157400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr9:94156000-94160800	Weak transcription	Fetal Brain Male	brain
9	chr9:94156200-94157400	Enhancers	Primary neutrophils fromperipheralblood	blood
10	chr9:94156600-94158200	Enhancers	HepG2	liver
11	chr9:94156600-94159000	Enhancers	Primary monocytes fromperipheralblood	blood
12	chr9:94156800-94157600	Enhancers	Muscle Satellite Cultured Cells	--
13	chr9:94156800-94158000	Enhancers	Liver	Liver
14	chr9:94156800-94158000	Enhancers	Fetal Intestine Large	intestine
15	chr9:94156800-94158800	Enhancers	Primary hematopoietic stem cells short term culture	blood
16	chr9:94157000-94158400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr9:94157000-94158400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr9:94157000-94158800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr9:94157000-94158800	Enhancers	Primary hematopoietic stem cells	blood
20	chr9:94157000-94159200	Enhancers	HMEC	breast
21	chr9:94157000-94159200	Enhancers	Osteobl	bone
22	chr9:94157000-94159400	Enhancers	Placenta	Placenta
23	chr9:94157200-94157400	Flanking Active TSS	A549	lung
24	chr9:94157200-94157600	Bivalent Enhancer	GM12878-XiMat	blood
25	chr9:94157200-94158000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
26	chr9:94157200-94158000	Enhancers	NHEK	skin
27	chr9:94157200-94158200	Enhancers	Hela-S3	cervix
28	chr9:94157200-94158200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
29	chr9:94157200-94158800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr9:94157200-94159000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr9:94157200-94159000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr9:94157200-94159000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links