Variant report

Variant	rs16907449
Chromosome Location	chr9:94154827-94154828
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10991918	0.94[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes]
rs10991919	1.00[AFR][1000 genomes]
rs10991921	0.98[AFR][1000 genomes]
rs16907444	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16907447	0.83[ASW][hapmap];1.00[LWK][hapmap];0.98[MKK][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes]
rs17582082	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4503207	0.85[AFR][1000 genomes]
rs4593679	0.80[AFR][1000 genomes]
rs7037297	0.97[AFR][1000 genomes]
rs7047662	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs883121	0.83[AFR][1000 genomes]
rs914450	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv482877	chr9:93979351-94157734	Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv893571	chr9:94072113-94202927	Genic enhancers Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv824980	chr9:94131502-94215911	Bivalent Enhancer Enhancers Bivalent/Poised TSS Active TSS Strong transcription Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:94149200-94156600	Weak transcription	HepG2	liver
2	chr9:94153600-94156600	Weak transcription	Primary monocytes fromperipheralblood	blood
3	chr9:94154000-94156000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr9:94154000-94157400	Weak transcription	NHLF	lung
5	chr9:94154200-94156000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr9:94154200-94157200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr9:94154200-94157400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr9:94154200-94157400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr9:94154400-94155000	Enhancers	K562	blood
10	chr9:94154400-94157000	Weak transcription	Osteobl	bone
11	chr9:94154400-94157200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr9:94154400-94157400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr9:94154400-94157400	Weak transcription	NHDF-Ad	bronchial
14	chr9:94154600-94155000	Enhancers	Primary hematopoietic stem cells short term culture	blood
15	chr9:94154600-94157000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr9:94154800-94157200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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