Variant report

Variant	rs10991902
Chromosome Location	chr9:94120676-94120677
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:94113397..94115728-chr9:94119035..94121876,2	MCF-7	breast:
2	chr9:94119074..94121011-chr9:94185358..94187790,2	MCF-7	breast:
3	chr9:94104145..94106983-chr9:94120665..94122259,2	K562	blood:

Variant related genes	Relation type
ENSG00000165030	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10820847	1.00[AMR][1000 genomes]
rs10991860	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10991865	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10991878	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10991920	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893570	chr9:93973938-94148084	Enhancers Genic enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv482877	chr9:93979351-94157734	Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv893571	chr9:94072113-94202927	Genic enhancers Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:94093200-94122600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr9:94097800-94121600	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr9:94101000-94122400	Weak transcription	HUVEC	blood vessel
4	chr9:94102000-94122400	Weak transcription	HMEC	breast
5	chr9:94104400-94122800	Weak transcription	Colonic Mucosa	Colon
6	chr9:94104600-94121200	Weak transcription	Brain Cingulate Gyrus	brain
7	chr9:94104600-94121400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
8	chr9:94104600-94122000	Weak transcription	Gastric	stomach
9	chr9:94104800-94121200	Weak transcription	Brain Anterior Caudate	brain
10	chr9:94104800-94121400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
11	chr9:94104800-94121400	Weak transcription	Brain Substantia Nigra	brain
12	chr9:94104800-94121800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
13	chr9:94104800-94122000	Weak transcription	Spleen	Spleen
14	chr9:94104800-94122400	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr9:94104800-94122400	Weak transcription	NHLF	lung
16	chr9:94104800-94122600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr9:94104800-94122600	Weak transcription	Placenta Amnion	Placenta Amnion
18	chr9:94104800-94122600	Weak transcription	HSMMtube	muscle
19	chr9:94104800-94123600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr9:94105200-94121400	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr9:94105200-94121800	Weak transcription	Fetal Brain Male	brain
22	chr9:94105200-94122600	Weak transcription	Osteobl	bone
23	chr9:94105200-94122800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr9:94105400-94122600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
25	chr9:94105600-94121000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
26	chr9:94105600-94123000	Weak transcription	Placenta	Placenta
27	chr9:94106400-94122800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr9:94108800-94122000	Weak transcription	H9 Cell Line	embryonic stem cell
29	chr9:94109800-94122600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
30	chr9:94109800-94123000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
31	chr9:94109800-94123000	Weak transcription	Esophagus	oesophagus
32	chr9:94110200-94122400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
33	chr9:94111200-94122000	Weak transcription	Pancreatic Islets	Pancreatic Islet
34	chr9:94112800-94122200	Strong transcription	HUES64 Cell Line	embryonic stem cell
35	chr9:94113600-94122600	Weak transcription	NH-A	brain
36	chr9:94114000-94121800	Weak transcription	Pancreas	Pancrea
37	chr9:94114000-94122600	Weak transcription	Fetal Muscle Leg	muscle
38	chr9:94114200-94121800	Weak transcription	Brain Hippocampus Middle	brain
39	chr9:94114200-94122400	Weak transcription	Fetal Kidney	kidney
40	chr9:94114200-94122400	Weak transcription	A549	lung
41	chr9:94114200-94122600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr9:94114200-94122800	Weak transcription	Aorta	Aorta
43	chr9:94114400-94121800	Weak transcription	Thymus	Thymus
44	chr9:94114400-94122000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
45	chr9:94114400-94122000	Weak transcription	Rectal Smooth Muscle	rectum
46	chr9:94114400-94122400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
47	chr9:94114600-94121400	Weak transcription	Brain Inferior Temporal Lobe	brain
48	chr9:94114600-94121800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
49	chr9:94114600-94122000	Weak transcription	Right Ventricle	heart
50	chr9:94114600-94122400	Weak transcription	H1 Cell Line	embryonic stem cell

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