Variant report

Variant	rs7868771
Chromosome Location	chr9:94108757-94108758
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:94105167..94106976-chr9:94108235..94109911,2	K562	blood:
2	chr9:94108145..94112527-chr9:94118537..94124275,7	MCF-7	breast:
3	chr9:94108485..94109093-chr9:94188188..94188989,2	MCF-7	breast:
4	chr9:94108222..94110620-chr9:94122202..94123731,2	MCF-7	breast:
5	chr9:94108255..94111188-chr9:94183602..94186828,3	K562	blood:
6	chr9:94107671..94110133-chr9:94123858..94125851,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000165030	Chromatin interaction
ENSG00000148090	Chromatin interaction
ENSG00000233081	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10991844	1.00[CEU][hapmap]
rs10991853	0.91[CHB][hapmap]
rs10991854	1.00[CEU][hapmap]
rs10991882	0.91[ASN][1000 genomes]
rs10991885	1.00[CEU][hapmap]
rs10991886	1.00[CEU][hapmap];0.81[JPT][hapmap]
rs10991887	0.85[JPT][hapmap]
rs10991892	0.82[EUR][1000 genomes]
rs10991893	0.82[CEU][hapmap];0.90[JPT][hapmap]
rs10991894	0.87[CEU][hapmap];0.82[JPT][hapmap]
rs10991896	0.85[CEU][hapmap];0.82[EUR][1000 genomes]
rs10991897	0.82[CEU][hapmap];0.95[JPT][hapmap];0.82[EUR][1000 genomes]
rs10991900	0.91[CHB][hapmap];0.91[ASN][1000 genomes]
rs10991901	1.00[CEU][hapmap];0.85[JPT][hapmap];0.82[EUR][1000 genomes]
rs10991903	0.82[EUR][1000 genomes]
rs10991904	1.00[CEU][hapmap];0.85[JPT][hapmap];0.82[EUR][1000 genomes]
rs10991906	1.00[CEU][hapmap];0.85[JPT][hapmap];0.82[EUR][1000 genomes]
rs12683737	0.87[CHB][hapmap]
rs1397575	0.86[CHB][hapmap]
rs16907311	1.00[CEU][hapmap]
rs16907394	0.91[ASN][1000 genomes]
rs1848984	0.87[CHB][hapmap]
rs4480236	0.92[ASN][1000 genomes]
rs57252569	0.91[AFR][1000 genomes]
rs59300141	0.91[AFR][1000 genomes]
rs59727648	0.81[ASN][1000 genomes]
rs60908817	0.86[AFR][1000 genomes]
rs6479337	0.91[CHB][hapmap];0.84[ASN][1000 genomes]
rs6479338	0.85[EUR][1000 genomes]
rs7020893	0.91[CHB][hapmap];0.91[ASN][1000 genomes]
rs7042178	0.91[ASN][1000 genomes]
rs7856089	0.82[CHB][hapmap]
rs7871207	0.89[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893570	chr9:93973938-94148084	Enhancers Genic enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv482877	chr9:93979351-94157734	Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv893571	chr9:94072113-94202927	Genic enhancers Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:94052000-94119200	Weak transcription	Small Intestine	intestine
2	chr9:94090600-94109400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr9:94093200-94122600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr9:94097800-94121600	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr9:94101000-94122400	Weak transcription	HUVEC	blood vessel
6	chr9:94102000-94122400	Weak transcription	HMEC	breast
7	chr9:94102400-94119400	Weak transcription	Psoas Muscle	Psoas
8	chr9:94104400-94113600	Weak transcription	Hela-S3	cervix
9	chr9:94104400-94122800	Weak transcription	Colonic Mucosa	Colon
10	chr9:94104600-94110800	Weak transcription	GM12878-XiMat	blood
11	chr9:94104600-94113400	Weak transcription	Right Ventricle	heart
12	chr9:94104600-94113600	Weak transcription	Primary neutrophils fromperipheralblood	blood
13	chr9:94104600-94121200	Weak transcription	Brain Cingulate Gyrus	brain
14	chr9:94104600-94121400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
15	chr9:94104600-94122000	Weak transcription	Gastric	stomach
16	chr9:94104800-94108800	Weak transcription	NHEK	skin
17	chr9:94104800-94109200	Weak transcription	Esophagus	oesophagus
18	chr9:94104800-94110400	Weak transcription	Pancreatic Islets	Pancreatic Islet
19	chr9:94104800-94110400	Weak transcription	Rectal Mucosa Donor 31	rectum
20	chr9:94104800-94112000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr9:94104800-94112000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
22	chr9:94104800-94112000	Weak transcription	Duodenum Mucosa	Duodenum
23	chr9:94104800-94112800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr9:94104800-94112800	Weak transcription	Fetal Intestine Small	intestine
25	chr9:94104800-94112800	Weak transcription	Pancreas	Pancrea
26	chr9:94104800-94113200	Weak transcription	Liver	Liver
27	chr9:94104800-94113200	Weak transcription	Left Ventricle	heart
28	chr9:94104800-94113400	Weak transcription	Aorta	Aorta
29	chr9:94104800-94113400	Weak transcription	Brain Angular Gyrus	brain
30	chr9:94104800-94113400	Weak transcription	Brain Hippocampus Middle	brain
31	chr9:94104800-94113400	Weak transcription	Fetal Brain Female	brain
32	chr9:94104800-94113400	Weak transcription	Fetal Kidney	kidney
33	chr9:94104800-94113400	Weak transcription	Lung	lung
34	chr9:94104800-94113600	Weak transcription	Brain Inferior Temporal Lobe	brain
35	chr9:94104800-94113600	Weak transcription	Skeletal Muscle Male	skeletal muscle
36	chr9:94104800-94113600	Weak transcription	A549	lung
37	chr9:94104800-94114000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
38	chr9:94104800-94116200	Weak transcription	Colon Smooth Muscle	Colon
39	chr9:94104800-94116600	Weak transcription	Duodenum Smooth Muscle	Duodenum
40	chr9:94104800-94116600	Weak transcription	HSMM	muscle
41	chr9:94104800-94117000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
42	chr9:94104800-94117000	Weak transcription	Dnd41	blood
43	chr9:94104800-94119800	Weak transcription	Ovary	ovary
44	chr9:94104800-94121200	Weak transcription	Brain Anterior Caudate	brain
45	chr9:94104800-94121400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
46	chr9:94104800-94121400	Weak transcription	Brain Substantia Nigra	brain
47	chr9:94104800-94121800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
48	chr9:94104800-94122000	Weak transcription	Spleen	Spleen
49	chr9:94104800-94122400	Weak transcription	Muscle Satellite Cultured Cells	--
50	chr9:94104800-94122400	Weak transcription	NHLF	lung

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