Variant report

Variant	rs10991882
Chromosome Location	chr9:94080601-94080602
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:94080566..94083057-chr9:94084498..94087491,3	K562	blood:
2	chr9:94080361..94081890-chr9:94083096..94085564,2	MCF-7	breast:
3	chr9:94079615..94081294-chr9:94087767..94090304,2	K562	blood:
4	chr9:94077918..94080792-chr9:94096846..94099494,2	MCF-7	breast:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10991844	0.81[CHB][hapmap]
rs10991848	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10991849	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10991853	0.93[CHB][hapmap];0.95[YRI][hapmap];0.93[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10991854	0.81[CHB][hapmap]
rs10991880	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10991885	0.81[CHB][hapmap]
rs10991886	0.81[CHB][hapmap]
rs10991887	0.81[CHB][hapmap]
rs10991894	0.81[CHB][hapmap]
rs10991897	0.81[CHB][hapmap]
rs10991900	0.93[CHB][hapmap];0.89[JPT][hapmap];0.95[YRI][hapmap];0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10991901	0.80[CHB][hapmap]
rs10991904	0.80[CHB][hapmap]
rs10991906	0.80[CHB][hapmap]
rs12683737	0.87[CHB][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13289294	0.82[ASN][1000 genomes]
rs1331691	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1397575	0.86[CHB][hapmap];0.86[EUR][1000 genomes]
rs16907311	0.81[CHB][hapmap]
rs16907358	0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs16907394	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1848984	0.87[CHB][hapmap];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1877125	0.86[EUR][1000 genomes]
rs4480236	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4628374	0.89[AFR][1000 genomes]
rs55642352	0.94[EUR][1000 genomes]
rs58307373	0.93[AFR][1000 genomes]
rs59727648	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6479337	0.93[CHB][hapmap];0.89[JPT][hapmap];0.95[YRI][hapmap];0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7019926	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7020893	0.93[CHB][hapmap];0.89[JPT][hapmap];0.95[YRI][hapmap];0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7028794	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7042178	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7849152	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7852888	0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7856089	0.84[JPT][hapmap];0.81[ASN][1000 genomes]
rs7866204	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7868501	0.86[EUR][1000 genomes]
rs7868771	0.93[CHB][hapmap];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893570	chr9:93973938-94148084	Enhancers Genic enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv482877	chr9:93979351-94157734	Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv893571	chr9:94072113-94202927	Genic enhancers Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:102 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:94033800-94096400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr9:94039200-94089800	Weak transcription	Esophagus	oesophagus
3	chr9:94052000-94119200	Weak transcription	Small Intestine	intestine
4	chr9:94053400-94103800	Weak transcription	HSMMtube	muscle
5	chr9:94055600-94089600	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr9:94056400-94089400	Weak transcription	Brain Cingulate Gyrus	brain
7	chr9:94057600-94086400	Weak transcription	Fetal Brain Male	brain
8	chr9:94057600-94089400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr9:94058000-94088000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
10	chr9:94058400-94089400	Weak transcription	Brain Angular Gyrus	brain
11	chr9:94058800-94091800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
12	chr9:94059200-94089400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr9:94059600-94082000	Weak transcription	Gastric	stomach
14	chr9:94059600-94103400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
15	chr9:94059800-94089400	Weak transcription	Rectal Mucosa Donor 31	rectum
16	chr9:94059800-94089400	Weak transcription	Dnd41	blood
17	chr9:94059800-94089600	Weak transcription	Brain Inferior Temporal Lobe	brain
18	chr9:94059800-94101400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
19	chr9:94060000-94089200	Weak transcription	Primary B cells from peripheral blood	blood
20	chr9:94060200-94089400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
21	chr9:94060400-94089400	Weak transcription	Fetal Thymus	thymus
22	chr9:94061000-94084600	Weak transcription	Primary T helper cells fromperipheralblood	blood
23	chr9:94061000-94089600	Weak transcription	Primary T cells fromperipheralblood	blood
24	chr9:94063400-94089400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
25	chr9:94064000-94089400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
26	chr9:94064000-94089400	Weak transcription	Ovary	ovary
27	chr9:94065400-94082200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
28	chr9:94065400-94089400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
29	chr9:94065400-94101400	Weak transcription	K562	blood
30	chr9:94065600-94089400	Weak transcription	Brain Anterior Caudate	brain
31	chr9:94065600-94089400	Weak transcription	Stomach Smooth Muscle	stomach
32	chr9:94065600-94091400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr9:94065600-94102000	Weak transcription	Hela-S3	cervix
34	chr9:94066000-94089600	Weak transcription	Duodenum Smooth Muscle	Duodenum
35	chr9:94066400-94103400	Weak transcription	Muscle Satellite Cultured Cells	--
36	chr9:94066600-94089600	Weak transcription	HUES48 Cell Line	embryonic stem cell
37	chr9:94066800-94083400	Weak transcription	NHDF-Ad	bronchial
38	chr9:94066800-94087200	Weak transcription	HUES64 Cell Line	embryonic stem cell
39	chr9:94066800-94089400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
40	chr9:94066800-94089400	Weak transcription	NHLF	lung
41	chr9:94066800-94104000	Weak transcription	HSMM	muscle
42	chr9:94067800-94094400	Weak transcription	Colon Smooth Muscle	Colon
43	chr9:94068400-94081800	Weak transcription	Left Ventricle	heart
44	chr9:94068400-94089200	Weak transcription	Skeletal Muscle Male	skeletal muscle
45	chr9:94068600-94082200	Weak transcription	Primary monocytes fromperipheralblood	blood
46	chr9:94068600-94082200	Weak transcription	Monocytes-CD14+_RO01746	blood
47	chr9:94068600-94082600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
48	chr9:94068600-94089200	Weak transcription	Brain Hippocampus Middle	brain
49	chr9:94069000-94089800	Weak transcription	Aorta	Aorta
50	chr9:94069200-94081600	Weak transcription	Fetal Heart	heart

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