Variant report
| Variant | rs1331691 |
|---|---|
| Chromosome Location | chr9:94129137-94129138 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:5)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:5 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr9:94117423..94119022-chr9:94128192..94130184,2 | MCF-7 | breast: | |
| 2 | chr9:94122694..94125118-chr9:94127022..94132461,6 | MCF-7 | breast: | |
| 3 | chr9:94124605..94126773-chr9:94127797..94129464,2 | K562 | blood: | |
| 4 | chr9:94127807..94131251-chr9:94131803..94134824,3 | K562 | blood: | |
| 5 | chr9:94123933..94127271-chr9:94127797..94131157,4 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000148090 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs10991848 | 0.88[EUR][1000 genomes] |
| rs10991849 | 0.88[EUR][1000 genomes] |
| rs10991853 | 0.88[EUR][1000 genomes] |
| rs10991880 | 0.90[AMR][1000 genomes];0.80[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs10991882 | 0.91[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs10991900 | 0.90[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs12683737 | 0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs1397575 | 0.84[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs16907358 | 0.88[EUR][1000 genomes] |
| rs16907394 | 0.91[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs1848984 | 0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs1877125 | 0.84[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs4354431 | 0.82[ASN][1000 genomes] |
| rs4480236 | 0.86[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs55642352 | 0.88[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs59727648 | 0.84[EUR][1000 genomes] |
| rs6479337 | 0.88[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs7019926 | 0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs7020893 | 0.90[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs7028794 | 0.89[EUR][1000 genomes] |
| rs7042178 | 0.83[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs7852888 | 0.88[EUR][1000 genomes] |
| rs7866204 | 0.85[EUR][1000 genomes] |
| rs7868501 | 0.84[EUR][1000 genomes];0.85[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv893570 | chr9:93973938-94148084 | Enhancers Genic enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 9 gene(s) | inside rSNPs | diseases |
| 2 | nsv482877 | chr9:93979351-94157734 | Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 3 | nsv893571 | chr9:94072113-94202927 | Genic enhancers Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 17 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
