Variant report

Variant	rs6479337
Chromosome Location	chr9:94110290-94110291
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:94108145..94112527-chr9:94118537..94124275,7	MCF-7	breast:
2	chr9:94108222..94110620-chr9:94122202..94123731,2	MCF-7	breast:
3	chr9:94108255..94111188-chr9:94183602..94186828,3	K562	blood:
4	chr9:94099451..94101101-chr9:94108763..94110540,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000165030	Chromatin interaction
ENSG00000148090	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10991848	0.85[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs10991849	0.85[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs10991853	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.90[YRI][hapmap];0.85[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs10991880	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10991882	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10991900	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12683737	1.00[CEU][hapmap];0.95[CHB][hapmap];0.83[JPT][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1331691	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1397575	1.00[CEU][hapmap];0.95[CHB][hapmap];0.84[EUR][1000 genomes]
rs16907358	0.88[EUR][1000 genomes]
rs16907394	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1848984	1.00[CEU][hapmap];0.95[CHB][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1877125	0.84[EUR][1000 genomes]
rs4480236	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4628374	0.82[AFR][1000 genomes]
rs55642352	0.88[EUR][1000 genomes]
rs58307373	0.85[AFR][1000 genomes]
rs59727648	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7019926	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7020893	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7028794	0.85[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs7042178	0.96[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7852888	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7856089	0.91[CHB][hapmap];0.86[JPT][hapmap]
rs7866204	0.85[EUR][1000 genomes]
rs7868501	0.84[EUR][1000 genomes]
rs7868771	0.91[CHB][hapmap];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893570	chr9:93973938-94148084	Enhancers Genic enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv482877	chr9:93979351-94157734	Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv893571	chr9:94072113-94202927	Genic enhancers Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:94052000-94119200	Weak transcription	Small Intestine	intestine
2	chr9:94093200-94122600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr9:94097800-94121600	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr9:94101000-94122400	Weak transcription	HUVEC	blood vessel
5	chr9:94102000-94122400	Weak transcription	HMEC	breast
6	chr9:94102400-94119400	Weak transcription	Psoas Muscle	Psoas
7	chr9:94104400-94113600	Weak transcription	Hela-S3	cervix
8	chr9:94104400-94122800	Weak transcription	Colonic Mucosa	Colon
9	chr9:94104600-94110800	Weak transcription	GM12878-XiMat	blood
10	chr9:94104600-94113400	Weak transcription	Right Ventricle	heart
11	chr9:94104600-94113600	Weak transcription	Primary neutrophils fromperipheralblood	blood
12	chr9:94104600-94121200	Weak transcription	Brain Cingulate Gyrus	brain
13	chr9:94104600-94121400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
14	chr9:94104600-94122000	Weak transcription	Gastric	stomach
15	chr9:94104800-94110400	Weak transcription	Pancreatic Islets	Pancreatic Islet
16	chr9:94104800-94110400	Weak transcription	Rectal Mucosa Donor 31	rectum
17	chr9:94104800-94112000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr9:94104800-94112000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
19	chr9:94104800-94112000	Weak transcription	Duodenum Mucosa	Duodenum
20	chr9:94104800-94112800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr9:94104800-94112800	Weak transcription	Fetal Intestine Small	intestine
22	chr9:94104800-94112800	Weak transcription	Pancreas	Pancrea
23	chr9:94104800-94113200	Weak transcription	Liver	Liver
24	chr9:94104800-94113200	Weak transcription	Left Ventricle	heart
25	chr9:94104800-94113400	Weak transcription	Aorta	Aorta
26	chr9:94104800-94113400	Weak transcription	Brain Angular Gyrus	brain
27	chr9:94104800-94113400	Weak transcription	Brain Hippocampus Middle	brain
28	chr9:94104800-94113400	Weak transcription	Fetal Brain Female	brain
29	chr9:94104800-94113400	Weak transcription	Fetal Kidney	kidney
30	chr9:94104800-94113400	Weak transcription	Lung	lung
31	chr9:94104800-94113600	Weak transcription	Brain Inferior Temporal Lobe	brain
32	chr9:94104800-94113600	Weak transcription	Skeletal Muscle Male	skeletal muscle
33	chr9:94104800-94113600	Weak transcription	A549	lung
34	chr9:94104800-94114000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
35	chr9:94104800-94116200	Weak transcription	Colon Smooth Muscle	Colon
36	chr9:94104800-94116600	Weak transcription	Duodenum Smooth Muscle	Duodenum
37	chr9:94104800-94116600	Weak transcription	HSMM	muscle
38	chr9:94104800-94117000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
39	chr9:94104800-94117000	Weak transcription	Dnd41	blood
40	chr9:94104800-94119800	Weak transcription	Ovary	ovary
41	chr9:94104800-94121200	Weak transcription	Brain Anterior Caudate	brain
42	chr9:94104800-94121400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
43	chr9:94104800-94121400	Weak transcription	Brain Substantia Nigra	brain
44	chr9:94104800-94121800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
45	chr9:94104800-94122000	Weak transcription	Spleen	Spleen
46	chr9:94104800-94122400	Weak transcription	Muscle Satellite Cultured Cells	--
47	chr9:94104800-94122400	Weak transcription	NHLF	lung
48	chr9:94104800-94122600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
49	chr9:94104800-94122600	Weak transcription	Placenta Amnion	Placenta Amnion
50	chr9:94104800-94122600	Weak transcription	HSMMtube	muscle

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