Variant report

Variant	rs7856089
Chromosome Location	chr9:94105457-94105458
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:94103649..94105719-chr9:94123863..94125427,2	MCF-7	breast:
2	chr9:94103409..94105645-chr9:94120684..94122259,2	K562	blood:
3	chr9:94087425..94089272-chr9:94102729..94105618,2	K562	blood:
4	chr9:94104145..94106983-chr9:94120665..94122259,2	K562	blood:
5	chr9:94094684..94097540-chr9:94102093..94106003,3	K562	blood:
6	chr9:94105167..94106976-chr9:94108235..94109911,2	K562	blood:

Variant related genes	Relation type
ENSG00000148090	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10991853	0.91[CHB][hapmap];0.82[CHD][hapmap];0.82[MEX][hapmap]
rs10991882	0.81[ASN][1000 genomes]
rs10991900	0.91[CHB][hapmap];0.82[CHD][hapmap];0.86[JPT][hapmap];0.82[MEX][hapmap];0.83[ASN][1000 genomes]
rs12683737	0.86[CHB][hapmap]
rs13289294	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1397575	0.86[CHB][hapmap]
rs16907394	0.81[ASN][1000 genomes]
rs1848984	0.86[CHB][hapmap]
rs4354431	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4480236	0.84[ASN][1000 genomes]
rs6479337	0.91[CHB][hapmap];0.86[JPT][hapmap]
rs7020893	0.91[CHB][hapmap];0.82[CHD][hapmap];0.86[JPT][hapmap];0.82[MEX][hapmap];0.83[ASN][1000 genomes]
rs7042178	0.83[ASN][1000 genomes]
rs7868771	0.82[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893570	chr9:93973938-94148084	Enhancers Genic enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv482877	chr9:93979351-94157734	Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv893571	chr9:94072113-94202927	Genic enhancers Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:94052000-94119200	Weak transcription	Small Intestine	intestine
2	chr9:94090200-94106200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr9:94090600-94108400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr9:94090600-94109400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr9:94093200-94122600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr9:94097800-94121600	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr9:94099200-94105600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
8	chr9:94099200-94105800	Strong transcription	Primary B cells from peripheral blood	blood
9	chr9:94099800-94108600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chr9:94100000-94106800	Strong transcription	Primary B cells from cord blood	blood
11	chr9:94101000-94122400	Weak transcription	HUVEC	blood vessel
12	chr9:94101800-94105600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chr9:94102000-94106000	Strong transcription	Fetal Stomach	stomach
14	chr9:94102000-94122400	Weak transcription	HMEC	breast
15	chr9:94102400-94119400	Weak transcription	Psoas Muscle	Psoas
16	chr9:94103400-94105600	Strong transcription	Placenta	Placenta
17	chr9:94103800-94105600	Strong transcription	Primary T helper memory cells from peripheral blood 1	blood
18	chr9:94104200-94105600	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr9:94104200-94105800	Strong transcription	Primary T helper cells PMA-I stimulated	--
20	chr9:94104400-94105600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
21	chr9:94104400-94113600	Weak transcription	Hela-S3	cervix
22	chr9:94104400-94122800	Weak transcription	Colonic Mucosa	Colon
23	chr9:94104600-94106200	Weak transcription	H9 Cell Line	embryonic stem cell
24	chr9:94104600-94106800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr9:94104600-94110800	Weak transcription	GM12878-XiMat	blood
26	chr9:94104600-94113400	Weak transcription	Right Ventricle	heart
27	chr9:94104600-94113600	Weak transcription	Primary neutrophils fromperipheralblood	blood
28	chr9:94104600-94121200	Weak transcription	Brain Cingulate Gyrus	brain
29	chr9:94104600-94121400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
30	chr9:94104600-94122000	Weak transcription	Gastric	stomach
31	chr9:94104800-94105600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr9:94104800-94105600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr9:94104800-94105600	Strong transcription	Monocytes-CD14+_RO01746	blood
34	chr9:94104800-94105800	Strong transcription	Primary hematopoietic stem cells	blood
35	chr9:94104800-94106200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr9:94104800-94106200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
37	chr9:94104800-94106200	Weak transcription	Rectal Smooth Muscle	rectum
38	chr9:94104800-94106600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr9:94104800-94106800	Strong transcription	Adipose Nuclei	Adipose
40	chr9:94104800-94108800	Weak transcription	NHEK	skin
41	chr9:94104800-94109200	Weak transcription	Esophagus	oesophagus
42	chr9:94104800-94110400	Weak transcription	Pancreatic Islets	Pancreatic Islet
43	chr9:94104800-94110400	Weak transcription	Rectal Mucosa Donor 31	rectum
44	chr9:94104800-94112000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
45	chr9:94104800-94112000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
46	chr9:94104800-94112000	Weak transcription	Duodenum Mucosa	Duodenum
47	chr9:94104800-94112800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
48	chr9:94104800-94112800	Weak transcription	Fetal Intestine Small	intestine
49	chr9:94104800-94112800	Weak transcription	Pancreas	Pancrea
50	chr9:94104800-94113200	Weak transcription	Liver	Liver

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