Variant report

Variant	rs16907394
Chromosome Location	chr9:94096317-94096318
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:94083711..94086738-chr9:94095670..94099237,3	K562	blood:
2	chr9:94094684..94097540-chr9:94102093..94106003,3	K562	blood:
3	chr9:94093775..94096685-chr9:94097839..94101388,3	MCF-7	breast:
4	chr9:94096260..94098366-chr9:94101881..94104584,2	MCF-7	breast:
5	chr9:94085941..94088500-chr9:94095338..94097321,2	K562	blood:
6	chr9:94092063..94094216-chr9:94095071..94096917,2	MCF-7	breast:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10991848	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10991849	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10991853	1.00[CEU][hapmap];0.95[CHB][hapmap];0.81[JPT][hapmap];0.90[YRI][hapmap];0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10991880	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10991882	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10991900	1.00[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12683737	1.00[CEU][hapmap];0.91[CHB][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13289294	0.82[ASN][1000 genomes]
rs1331691	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1397575	1.00[CEU][hapmap];0.91[CHB][hapmap];0.86[EUR][1000 genomes]
rs16907358	0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1848984	1.00[CEU][hapmap];0.91[CHB][hapmap];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1877125	0.86[EUR][1000 genomes]
rs4480236	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4628374	0.83[AFR][1000 genomes]
rs55642352	0.94[EUR][1000 genomes]
rs58307373	0.86[AFR][1000 genomes]
rs59727648	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6479337	1.00[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7019926	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7020893	0.93[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7028794	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7042178	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7849152	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7852888	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7856089	0.86[CHB][hapmap];0.81[ASN][1000 genomes]
rs7866204	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7868501	0.86[EUR][1000 genomes]
rs7868771	0.86[CHB][hapmap];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893570	chr9:93973938-94148084	Enhancers Genic enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv482877	chr9:93979351-94157734	Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv893571	chr9:94072113-94202927	Genic enhancers Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:106 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:94033800-94096400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr9:94052000-94119200	Weak transcription	Small Intestine	intestine
3	chr9:94053400-94103800	Weak transcription	HSMMtube	muscle
4	chr9:94059600-94103400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr9:94059800-94101400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
6	chr9:94065400-94101400	Weak transcription	K562	blood
7	chr9:94065600-94102000	Weak transcription	Hela-S3	cervix
8	chr9:94066400-94103400	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr9:94066800-94104000	Weak transcription	HSMM	muscle
10	chr9:94072800-94101200	Weak transcription	Primary T helper cells PMA-I stimulated	--
11	chr9:94074600-94103800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
12	chr9:94075800-94104200	Weak transcription	NHEK	skin
13	chr9:94080800-94101000	Weak transcription	Fetal Kidney	kidney
14	chr9:94080800-94102400	Weak transcription	Colonic Mucosa	Colon
15	chr9:94081000-94101000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
16	chr9:94082200-94104000	Weak transcription	Primary neutrophils fromperipheralblood	blood
17	chr9:94084400-94104200	Weak transcription	NHDF-Ad	bronchial
18	chr9:94087800-94103600	Weak transcription	A549	lung
19	chr9:94088600-94099800	Weak transcription	Sigmoid Colon	Sigmoid Colon
20	chr9:94090000-94103400	Weak transcription	Brain Angular Gyrus	brain
21	chr9:94090200-94099600	Weak transcription	Stomach Smooth Muscle	stomach
22	chr9:94090200-94101400	Weak transcription	Brain Cingulate Gyrus	brain
23	chr9:94090200-94104000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr9:94090200-94106200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
25	chr9:94090400-94096400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr9:94090400-94099400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr9:94090400-94099600	Weak transcription	Primary T cells fromperipheralblood	blood
28	chr9:94090400-94100600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
29	chr9:94090400-94101000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
30	chr9:94090400-94101400	Weak transcription	Brain Anterior Caudate	brain
31	chr9:94090400-94101400	Weak transcription	Rectal Mucosa Donor 31	rectum
32	chr9:94090400-94103400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
33	chr9:94090400-94103400	Weak transcription	Gastric	stomach
34	chr9:94090400-94104000	Weak transcription	NHLF	lung
35	chr9:94090400-94104200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr9:94090400-94104200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr9:94090400-94104200	Weak transcription	Aorta	Aorta
38	chr9:94090400-94104200	Weak transcription	Brain Inferior Temporal Lobe	brain
39	chr9:94090400-94104200	Weak transcription	Esophagus	oesophagus
40	chr9:94090600-94100000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
41	chr9:94090600-94100000	Weak transcription	Rectal Mucosa Donor 29	rectum
42	chr9:94090600-94100400	Weak transcription	HepG2	liver
43	chr9:94090600-94103200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
44	chr9:94090600-94103200	Weak transcription	Fetal Thymus	thymus
45	chr9:94090600-94103400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
46	chr9:94090600-94103400	Weak transcription	Spleen	Spleen
47	chr9:94090600-94104000	Weak transcription	Ovary	ovary
48	chr9:94090600-94108400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
49	chr9:94090600-94109400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
50	chr9:94090800-94099200	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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