Variant report

Variant	rs1848984
Chromosome Location	chr9:94063651-94063652
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:94063221..94065813-chr9:94122626..94124840,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000148090	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10991837	0.80[EUR][1000 genomes]
rs10991848	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10991849	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10991853	1.00[CEU][hapmap];0.95[CHB][hapmap];0.82[JPT][hapmap];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10991880	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10991882	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10991900	1.00[CEU][hapmap];0.95[CHB][hapmap];0.91[EUR][1000 genomes]
rs12683737	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap];0.92[YRI][hapmap];0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1331691	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1397575	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16907358	0.97[EUR][1000 genomes]
rs16907394	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1877125	0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4480236	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs55642352	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs59727648	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6479337	1.00[CEU][hapmap];0.95[CHB][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7019926	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7020893	0.94[CEU][hapmap];0.95[CHB][hapmap];0.89[EUR][1000 genomes]
rs7028794	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7036028	0.84[YRI][hapmap]
rs7042178	0.85[EUR][1000 genomes]
rs7849152	0.84[EUR][1000 genomes]
rs7852888	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7856089	0.86[CHB][hapmap]
rs7857616	0.80[EUR][1000 genomes]
rs7866204	0.89[EUR][1000 genomes]
rs7868501	0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7868771	0.87[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893570	chr9:93973938-94148084	Enhancers Genic enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv482877	chr9:93979351-94157734	Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:109 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:94019400-94068200	Weak transcription	Right Ventricle	heart
2	chr9:94029400-94080000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr9:94033800-94096400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr9:94035400-94064800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr9:94039200-94089800	Weak transcription	Esophagus	oesophagus
6	chr9:94042000-94071800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr9:94048800-94065000	Weak transcription	A549	lung
8	chr9:94049400-94065000	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr9:94052000-94119200	Weak transcription	Small Intestine	intestine
10	chr9:94053400-94103800	Weak transcription	HSMMtube	muscle
11	chr9:94055600-94089600	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr9:94055800-94065000	Weak transcription	HSMM	muscle
13	chr9:94055800-94065200	Weak transcription	GM12878-XiMat	blood
14	chr9:94056400-94067800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr9:94056400-94089400	Weak transcription	Brain Cingulate Gyrus	brain
16	chr9:94056600-94067600	Weak transcription	Fetal Heart	heart
17	chr9:94057000-94068600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr9:94057600-94072000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
19	chr9:94057600-94086400	Weak transcription	Fetal Brain Male	brain
20	chr9:94057600-94089400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr9:94058000-94088000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
22	chr9:94058400-94065000	Weak transcription	Brain Anterior Caudate	brain
23	chr9:94058400-94065800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
24	chr9:94058400-94066000	Weak transcription	HUES64 Cell Line	embryonic stem cell
25	chr9:94058400-94066200	Weak transcription	HUES6 Cell Line	embryonic stem cell
26	chr9:94058400-94068000	Weak transcription	Brain Hippocampus Middle	brain
27	chr9:94058400-94071800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr9:94058400-94080400	Weak transcription	Fetal Kidney	kidney
29	chr9:94058400-94089400	Weak transcription	Brain Angular Gyrus	brain
30	chr9:94058800-94091800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
31	chr9:94059000-94065000	Enhancers	Primary monocytes fromperipheralblood	blood
32	chr9:94059200-94089400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr9:94059400-94077600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
34	chr9:94059600-94064800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr9:94059600-94065000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
36	chr9:94059600-94074000	Weak transcription	Spleen	Spleen
37	chr9:94059600-94077000	Weak transcription	Sigmoid Colon	Sigmoid Colon
38	chr9:94059600-94080400	Weak transcription	Fetal Muscle Trunk	muscle
39	chr9:94059600-94080600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr9:94059600-94082000	Weak transcription	Gastric	stomach
41	chr9:94059600-94103400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
42	chr9:94059800-94064200	Enhancers	Fetal Lung	lung
43	chr9:94059800-94065000	Weak transcription	Duodenum Mucosa	Duodenum
44	chr9:94059800-94065800	Weak transcription	HepG2	liver
45	chr9:94059800-94066000	Weak transcription	H1 Cell Line	embryonic stem cell
46	chr9:94059800-94071800	Weak transcription	Primary T helper cells PMA-I stimulated	--
47	chr9:94059800-94072400	Weak transcription	Rectal Mucosa Donor 29	rectum
48	chr9:94059800-94089400	Weak transcription	Rectal Mucosa Donor 31	rectum
49	chr9:94059800-94089400	Weak transcription	Dnd41	blood
50	chr9:94059800-94089600	Weak transcription	Brain Inferior Temporal Lobe	brain

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