Variant report

Variant	rs6479338
Chromosome Location	chr9:94141637-94141638
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1574147	0.85[ASN][1000 genomes]
rs2990343	0.87[ASN][1000 genomes]
rs56924073	0.95[AFR][1000 genomes]
rs57290876	1.00[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs57624333	1.00[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs57891613	0.88[AFR][1000 genomes]
rs59210705	1.00[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs59271728	0.95[AFR][1000 genomes]
rs59655789	0.88[AFR][1000 genomes]
rs7042252	0.86[ASN][1000 genomes]
rs73497200	0.81[AFR][1000 genomes]
rs73503277	0.95[AFR][1000 genomes]
rs73503286	1.00[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs73503292	1.00[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs73503296	0.95[AFR][1000 genomes]
rs73503298	1.00[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs73503300	1.00[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs73505203	0.93[AFR][1000 genomes]
rs73505205	0.93[AFR][1000 genomes]
rs73505206	0.86[AFR][1000 genomes]
rs774224	0.87[ASN][1000 genomes]
rs774225	0.87[ASN][1000 genomes]
rs7856351	0.96[ASN][1000 genomes]
rs7866310	0.93[AFR][1000 genomes]
rs7868771	0.85[EUR][1000 genomes]
rs7871246	0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893570	chr9:93973938-94148084	Enhancers Genic enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv482877	chr9:93979351-94157734	Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv893571	chr9:94072113-94202927	Genic enhancers Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
4	nsv824980	chr9:94131502-94215911	Bivalent Enhancer Enhancers Bivalent/Poised TSS Active TSS Strong transcription Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:94138800-94145200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr9:94139800-94142000	Enhancers	HUVEC	blood vessel
3	chr9:94140200-94142000	Enhancers	Placenta	Placenta
4	chr9:94140600-94142000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr9:94140600-94142000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr9:94140600-94142000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr9:94140600-94142000	Enhancers	Adipose Nuclei	Adipose
8	chr9:94140800-94141800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr9:94140800-94142000	Enhancers	Fetal Lung	lung
10	chr9:94141200-94141800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr9:94141400-94144800	Weak transcription	Muscle Satellite Cultured Cells	--

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dbSNP/dbVar ID: rs12345 /nsv7879
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