Variant report

Variant	rs59271728
Chromosome Location	chr9:94140671-94140672
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:94123051..94124781-chr9:94139857..94141760,2	MCF-7	breast:
2	chr9:94122629..94124682-chr9:94139349..94141516,2	K562	blood:

Variant related genes	Relation type
ENSG00000148090	Chromatin interaction

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs10991804	0.92[EUR][1000 genomes]
rs10991805	0.92[EUR][1000 genomes]
rs10991806	0.92[EUR][1000 genomes]
rs10991817	1.00[EUR][1000 genomes]
rs10991818	1.00[EUR][1000 genomes]
rs10991822	1.00[EUR][1000 genomes]
rs10991830	1.00[EUR][1000 genomes]
rs12236197	1.00[EUR][1000 genomes]
rs12236200	1.00[EUR][1000 genomes]
rs12236228	1.00[EUR][1000 genomes]
rs16907283	1.00[EUR][1000 genomes]
rs16907285	0.92[EUR][1000 genomes]
rs56673856	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56703453	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56878940	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56924073	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57231133	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs57252569	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57290876	0.95[AFR][1000 genomes]
rs57417571	0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs57624333	0.95[AFR][1000 genomes]
rs57891613	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58116121	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs58154704	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs58170057	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs58543156	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59049485	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs59101284	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs59183509	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs59210705	0.95[AFR][1000 genomes]
rs59300141	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59555429	1.00[EUR][1000 genomes]
rs59655789	0.83[AFR][1000 genomes]
rs59752488	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs59800170	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs59849416	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60448531	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs60709727	0.92[EUR][1000 genomes]
rs60833404	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60908817	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61330200	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61566702	1.00[EUR][1000 genomes]
rs61613297	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6479338	0.95[AFR][1000 genomes]
rs7031841	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7042607	1.00[EUR][1000 genomes]
rs7043392	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7045388	1.00[EUR][1000 genomes]
rs73497200	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73503277	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73503286	0.95[AFR][1000 genomes]
rs73503292	0.95[AFR][1000 genomes]
rs73503296	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73503298	0.95[AFR][1000 genomes]
rs73503300	0.95[AFR][1000 genomes]
rs73505203	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73505205	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73505206	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7849844	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7863280	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7866310	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7870604	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7871207	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893570	chr9:93973938-94148084	Enhancers Genic enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv482877	chr9:93979351-94157734	Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv893571	chr9:94072113-94202927	Genic enhancers Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
4	nsv824980	chr9:94131502-94215911	Bivalent Enhancer Enhancers Bivalent/Poised TSS Active TSS Strong transcription Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:94137800-94140800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr9:94137800-94140800	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr9:94137800-94140800	Weak transcription	NH-A	brain
4	chr9:94137800-94140800	Weak transcription	Osteobl	bone
5	chr9:94138800-94140800	Weak transcription	NHDF-Ad	bronchial
6	chr9:94138800-94145200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr9:94139800-94142000	Enhancers	HUVEC	blood vessel
8	chr9:94140200-94142000	Enhancers	Placenta	Placenta
9	chr9:94140600-94141200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr9:94140600-94142000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr9:94140600-94142000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr9:94140600-94142000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr9:94140600-94142000	Enhancers	Adipose Nuclei	Adipose

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