Variant report

Variant	rs7849844
Chromosome Location	chr9:94058207-94058208
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10991804	0.85[EUR][1000 genomes]
rs10991805	0.85[EUR][1000 genomes]
rs10991806	0.85[EUR][1000 genomes]
rs10991817	0.92[EUR][1000 genomes]
rs10991818	0.92[EUR][1000 genomes]
rs10991822	0.92[EUR][1000 genomes]
rs10991830	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12236197	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12236200	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12236228	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs16907283	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs16907285	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs56673856	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56703453	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56878940	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56924073	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs57231133	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57252569	0.80[AFR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs57417571	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs57891613	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs58116121	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58154704	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs58170057	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58543156	0.88[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs59049485	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs59101284	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59183509	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs59271728	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs59300141	0.80[AFR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs59555429	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs59752488	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59800170	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59849416	0.95[AFR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs60448531	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs60709727	0.85[EUR][1000 genomes]
rs60833404	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs60908817	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61330200	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61566702	0.92[EUR][1000 genomes]
rs61613297	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7031841	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7042607	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7043392	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7045388	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73497200	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73503277	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73503296	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73505203	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73505205	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73505206	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7863280	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7866310	0.92[EUR][1000 genomes]
rs7868771	0.89[YRI][hapmap]
rs7870604	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7871207	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893570	chr9:93973938-94148084	Enhancers Genic enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv482877	chr9:93979351-94157734	Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:94019200-94059200	Weak transcription	Spleen	Spleen
2	chr9:94019400-94068200	Weak transcription	Right Ventricle	heart
3	chr9:94024800-94059400	Weak transcription	Pancreas	Pancrea
4	chr9:94029400-94080000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr9:94033800-94096400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr9:94035400-94064800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr9:94037400-94060200	Weak transcription	NHDF-Ad	bronchial
8	chr9:94039200-94089800	Weak transcription	Esophagus	oesophagus
9	chr9:94039400-94060800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
10	chr9:94041600-94059200	Weak transcription	Lung	lung
11	chr9:94042000-94071800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr9:94044800-94060800	Weak transcription	HMEC	breast
13	chr9:94044800-94062800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr9:94045000-94063000	Weak transcription	Psoas Muscle	Psoas
15	chr9:94048800-94060200	Weak transcription	Osteobl	bone
16	chr9:94048800-94065000	Weak transcription	A549	lung
17	chr9:94049400-94065000	Weak transcription	Pancreatic Islets	Pancreatic Islet
18	chr9:94052000-94119200	Weak transcription	Small Intestine	intestine
19	chr9:94052200-94059800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
20	chr9:94052200-94060000	Strong transcription	Fetal Intestine Small	intestine
21	chr9:94052400-94060200	Strong transcription	Fetal Intestine Large	intestine
22	chr9:94052600-94059000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr9:94052600-94059600	Strong transcription	Fetal Muscle Trunk	muscle
24	chr9:94052600-94059800	Strong transcription	Primary T helper cells PMA-I stimulated	--
25	chr9:94053400-94059200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
26	chr9:94053400-94061000	Strong transcription	Primary T helper cells fromperipheralblood	blood
27	chr9:94053400-94103800	Weak transcription	HSMMtube	muscle
28	chr9:94054000-94059200	Strong transcription	Primary hematopoietic stem cells	blood
29	chr9:94054000-94061000	Strong transcription	Primary T cells fromperipheralblood	blood
30	chr9:94054200-94059200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr9:94054200-94059600	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
32	chr9:94054200-94060000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
33	chr9:94054400-94058400	Strong transcription	Brain Hippocampus Middle	brain
34	chr9:94054400-94059800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr9:94054400-94059800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr9:94054400-94060400	Strong transcription	Fetal Thymus	thymus
37	chr9:94054600-94058400	Strong transcription	HUES6 Cell Line	embryonic stem cell
38	chr9:94054600-94058600	Strong transcription	Primary B cells from cord blood	blood
39	chr9:94054600-94059600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
40	chr9:94054600-94059600	Strong transcription	Left Ventricle	heart
41	chr9:94054600-94059800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr9:94054600-94059800	Strong transcription	Duodenum Mucosa	Duodenum
43	chr9:94054600-94059800	Strong transcription	Rectal Mucosa Donor 31	rectum
44	chr9:94054600-94060000	Strong transcription	Liver	Liver
45	chr9:94054600-94060200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
46	chr9:94054800-94058400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr9:94054800-94059600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
48	chr9:94054800-94059600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
49	chr9:94054800-94059800	Strong transcription	Brain Germinal Matrix	brain
50	chr9:94054800-94060000	Strong transcription	Fetal Muscle Leg	muscle

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