Variant report

Variant	rs10991822
Chromosome Location	chr9:93956109-93956110
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:21)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:21 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:93876958..93880212-chr9:93954680..93957779,3	K562	blood:
2	chr9:93954564..93957663-chr9:94184637..94187181,3	MCF-7	breast:
3	chr9:93956099..93958842-chr9:93964995..93966534,2	MCF-7	breast:
4	chr9:93954538..93956167-chr9:94068967..94070519,2	K562	blood:
5	chr6:3000033..3000550-chr9:93955346..93956273,2	Hela-S3	cervix:
6	chr21:38444573..38445372-chr9:93955510..93956347,2	Hela-S3	cervix:
7	chr9:93954809..93958074-chr9:93968864..93971962,3	MCF-7	breast:
8	chr9:93954745..93957356-chr9:93959373..93965297,8	MCF-7	breast:
9	chr9:93953759..93956492-chr9:93979934..93981745,2	K562	blood:
10	chr9:93895358..93897035-chr9:93953953..93956875,2	MCF-7	breast:
11	chr9:93953851..93958747-chr9:94181568..94185373,5	K562	blood:
12	chr9:93955512..93957645-chr9:94181568..94183093,2	K562	blood:
13	chr9:93892652..93894878-chr9:93954710..93956598,3	MCF-7	breast:
14	chr9:93930340..93932709-chr9:93954014..93956744,2	K562	blood:
15	chr9:93952520..93956320-chr9:94184943..94188972,4	K562	blood:
16	chr9:93956017..93958236-chr9:93971248..93973201,2	K562	blood:
17	chr9:93954102..93956914-chr9:94120904..94123589,2	K562	blood:
18	chr11:65670289..65671086-chr9:93955388..93956250,2	Hela-S3	cervix:
19	chr9:93938945..93942205-chr9:93953498..93957392,4	K562	blood:
20	chr9:93955093..93956990-chr9:94008312..94009958,2	K562	blood:
21	chr9:91002684..91004855-chr9:93955430..93957716,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000106723	Chromatin interaction
ENSG00000185808	Chromatin interaction
ENSG00000230147	Chromatin interaction
ENSG00000124588	Chromatin interaction
ENSG00000273381	Chromatin interaction
ENSG00000233081	Chromatin interaction
ENSG00000165030	Chromatin interaction

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10991804	0.92[EUR][1000 genomes]
rs10991805	0.92[EUR][1000 genomes]
rs10991806	0.92[EUR][1000 genomes]
rs10991817	1.00[EUR][1000 genomes]
rs10991818	1.00[EUR][1000 genomes]
rs10991821	0.92[ASN][1000 genomes]
rs10991830	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12236197	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12236200	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12236228	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16907283	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16907285	0.93[AFR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56673856	1.00[EUR][1000 genomes]
rs56703453	1.00[EUR][1000 genomes]
rs56878940	1.00[EUR][1000 genomes]
rs56924073	1.00[EUR][1000 genomes]
rs57231133	1.00[EUR][1000 genomes]
rs57252569	1.00[EUR][1000 genomes]
rs57417571	0.85[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs57891613	1.00[EUR][1000 genomes]
rs58116121	1.00[EUR][1000 genomes]
rs58154704	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs58170057	1.00[EUR][1000 genomes]
rs58543156	0.85[EUR][1000 genomes]
rs59049485	1.00[EUR][1000 genomes]
rs59101284	1.00[EUR][1000 genomes]
rs59183509	0.85[EUR][1000 genomes]
rs59271728	1.00[EUR][1000 genomes]
rs59300141	1.00[EUR][1000 genomes]
rs59555429	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs59752488	1.00[EUR][1000 genomes]
rs59800170	1.00[EUR][1000 genomes]
rs59849416	1.00[EUR][1000 genomes]
rs60448531	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs60709727	0.92[EUR][1000 genomes]
rs60833404	1.00[EUR][1000 genomes]
rs60908817	1.00[EUR][1000 genomes]
rs61330200	0.92[EUR][1000 genomes]
rs61566702	1.00[EUR][1000 genomes]
rs61613297	0.85[EUR][1000 genomes]
rs7031841	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7042607	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7043392	1.00[EUR][1000 genomes]
rs7045388	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73497200	1.00[EUR][1000 genomes]
rs73503277	1.00[EUR][1000 genomes]
rs73503296	1.00[EUR][1000 genomes]
rs73505203	1.00[EUR][1000 genomes]
rs73505205	1.00[EUR][1000 genomes]
rs73505206	1.00[EUR][1000 genomes]
rs7849844	0.92[EUR][1000 genomes]
rs7863280	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7866310	1.00[EUR][1000 genomes]
rs7870604	1.00[EUR][1000 genomes]
rs7871207	1.00[EUR][1000 genomes]

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:93941000-93957400	Weak transcription	Gastric	stomach
2	chr9:93954000-93959200	Enhancers	Sigmoid Colon	Sigmoid Colon
3	chr9:93954400-93956800	Flanking Active TSS	Stomach Smooth Muscle	stomach
4	chr9:93954600-93956200	Weak transcription	Lung	lung
5	chr9:93954600-93956800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr9:93954600-93957000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr9:93954800-93956600	Enhancers	HMEC	breast
8	chr9:93954800-93956800	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
9	chr9:93954800-93957000	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
10	chr9:93955000-93956200	Active TSS	Aorta	Aorta
11	chr9:93955000-93956200	Active TSS	Colon Smooth Muscle	Colon
12	chr9:93955000-93956200	Active TSS	Rectal Smooth Muscle	rectum
13	chr9:93955000-93956200	Active TSS	Right Ventricle	heart
14	chr9:93955000-93956200	Active TSS	Skeletal Muscle Female	skeletal muscle
15	chr9:93955000-93956400	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
16	chr9:93955000-93956400	Active TSS	Brain Angular Gyrus	brain
17	chr9:93955000-93956400	Active TSS	Brain Anterior Caudate	brain
18	chr9:93955000-93956400	Active TSS	Brain Hippocampus Middle	brain
19	chr9:93955000-93956400	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
20	chr9:93955000-93956600	Flanking Active TSS	Fetal Muscle Leg	muscle
21	chr9:93955000-93956800	Active TSS	Duodenum Smooth Muscle	Duodenum
22	chr9:93955000-93960400	Enhancers	Fetal Heart	heart
23	chr9:93955200-93956200	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
24	chr9:93955200-93956200	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr9:93955200-93956200	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr9:93955200-93956200	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
27	chr9:93955200-93956200	Active TSS	Skeletal Muscle Male	skeletal muscle
28	chr9:93955200-93956400	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
29	chr9:93955200-93956400	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr9:93955200-93956400	Active TSS	Hela-S3	cervix
31	chr9:93955200-93956600	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
32	chr9:93955200-93956600	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
33	chr9:93955200-93956600	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
34	chr9:93955200-93956600	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
35	chr9:93955200-93957000	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
36	chr9:93955200-93957200	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
37	chr9:93955200-93957400	Active TSS	Liver	Liver
38	chr9:93955400-93956200	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
39	chr9:93955400-93956200	Active TSS	Primary mononuclear cells fromperipheralblood	Blood
40	chr9:93955400-93956200	Active TSS	Brain Inferior Temporal Lobe	brain
41	chr9:93955400-93956200	Active TSS	Esophagus	oesophagus
42	chr9:93955400-93956200	Active TSS	Pancreas	Pancrea
43	chr9:93955400-93956200	Active TSS	Right Atrium	heart
44	chr9:93955400-93956200	Flanking Active TSS	NHEK	skin
45	chr9:93955400-93956400	Flanking Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
46	chr9:93955400-93956400	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
47	chr9:93955400-93956400	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
48	chr9:93955400-93956400	Active TSS	Breast Myoepithelial Primary Cells	Breast
49	chr9:93955400-93956400	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
50	chr9:93955400-93956400	Active TSS	Primary T helper naive cells fromperipheralblood	blood

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