Variant report

Variant	rs59183509
Chromosome Location	chr9:93999758-93999759
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:93998370..94000905-chr9:94003934..94005756,2	MCF-7	breast:

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10991817	0.85[EUR][1000 genomes]
rs10991818	0.85[EUR][1000 genomes]
rs10991822	0.85[EUR][1000 genomes]
rs10991830	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12236197	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12236200	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12236228	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs16907283	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs16907285	1.00[AMR][1000 genomes]
rs56673856	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56703453	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56878940	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56924073	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs57231133	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57252569	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs57417571	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs57891613	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs58116121	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58154704	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs58170057	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58543156	0.84[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs59049485	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs59101284	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59271728	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs59300141	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs59555429	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs59752488	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59800170	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59849416	0.90[AFR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs60448531	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs60833404	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs60908817	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61330200	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61566702	0.85[EUR][1000 genomes]
rs61613297	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7031841	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7042607	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7043392	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7045388	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73497200	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73503277	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73503296	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73505203	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73505205	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73505206	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7849844	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7863280	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7866310	0.85[EUR][1000 genomes]
rs7870604	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7871207	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893570	chr9:93973938-94148084	Enhancers Genic enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv482877	chr9:93979351-94157734	Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:93970400-94005400	Weak transcription	Aorta	Aorta
2	chr9:93971000-94007800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr9:93971400-94009400	Weak transcription	Spleen	Spleen
4	chr9:93971800-94008000	Weak transcription	Primary B cells from peripheral blood	blood
5	chr9:93972800-94009200	Weak transcription	Brain Germinal Matrix	brain
6	chr9:93975800-94005000	Weak transcription	Fetal Kidney	kidney
7	chr9:93976000-94002000	Weak transcription	Gastric	stomach
8	chr9:93980600-94007600	Weak transcription	Primary B cells from cord blood	blood
9	chr9:93981600-94002000	Weak transcription	Pancreas	Pancrea
10	chr9:93981600-94004200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr9:93981600-94008000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr9:93981600-94008000	Weak transcription	Esophagus	oesophagus
13	chr9:93982600-94008200	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr9:93982800-94032400	Weak transcription	Ovary	ovary
15	chr9:93983000-94003000	Weak transcription	Right Ventricle	heart
16	chr9:93983000-94005600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
17	chr9:93983000-94008200	Weak transcription	Duodenum Mucosa	Duodenum
18	chr9:93983000-94009000	Weak transcription	Fetal Lung	lung
19	chr9:93983000-94027000	Weak transcription	Fetal Intestine Large	intestine
20	chr9:93983000-94054000	Weak transcription	Primary hematopoietic stem cells	blood
21	chr9:93983200-94005400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr9:93983200-94015400	Weak transcription	Thymus	Thymus
23	chr9:93983200-94015800	Weak transcription	Rectal Mucosa Donor 31	rectum
24	chr9:93983200-94027800	Weak transcription	Adipose Nuclei	Adipose
25	chr9:93983800-94010800	Weak transcription	Stomach Smooth Muscle	stomach
26	chr9:93984000-94052200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
27	chr9:93984000-94054600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
28	chr9:93984200-94024000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr9:93984400-94026200	Weak transcription	Primary T cells from cord blood	blood
30	chr9:93986400-94001600	Weak transcription	Fetal Muscle Leg	muscle
31	chr9:93993400-94008400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
32	chr9:93995000-94001600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr9:93995600-94009200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
34	chr9:93995800-94004200	Weak transcription	Psoas Muscle	Psoas
35	chr9:93995800-94018600	Weak transcription	Fetal Intestine Small	intestine
36	chr9:93995800-94052400	Weak transcription	Fetal Stomach	stomach
37	chr9:93996600-94002600	Weak transcription	Left Ventricle	heart
38	chr9:93996600-94004200	Weak transcription	Skeletal Muscle Male	skeletal muscle
39	chr9:93996600-94004200	Weak transcription	Skeletal Muscle Female	skeletal muscle
40	chr9:93996600-94004200	Weak transcription	HepG2	liver
41	chr9:93996800-94012400	Weak transcription	HSMMtube	muscle
42	chr9:93998000-94001800	Weak transcription	Pancreatic Islets	Pancreatic Islet
43	chr9:93999200-94015800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood

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