Variant report

Variant	rs12236200
Chromosome Location	chr9:93971892-93971893
allele	A/C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:93969893..93972438-chr9:93978667..93980846,2	K562	blood:
2	chr9:93970328..93972438-chr9:93979346..93981110,2	K562	blood:
3	chr9:93954809..93958074-chr9:93968864..93971962,3	MCF-7	breast:
4	chr9:93964083..93965933-chr9:93969852..93971912,2	K562	blood:
5	chr9:93970388..93972029-chr9:93976799..93979788,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-AUH-6	chr9:93968457-93972581	ENSG00000273381.1

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10991804	0.92[EUR][1000 genomes]
rs10991805	0.92[EUR][1000 genomes]
rs10991806	0.92[EUR][1000 genomes]
rs10991817	1.00[EUR][1000 genomes]
rs10991818	1.00[EUR][1000 genomes]
rs10991821	0.92[CHB][hapmap];0.92[CHD][hapmap];0.89[JPT][hapmap];0.90[ASN][1000 genomes]
rs10991822	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10991830	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12236197	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12236228	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16907283	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16907285	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35278373	0.84[AFR][1000 genomes]
rs56673856	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56703453	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56878940	1.00[EUR][1000 genomes]
rs56924073	1.00[EUR][1000 genomes]
rs57231133	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57252569	1.00[EUR][1000 genomes]
rs57417571	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs57891613	1.00[EUR][1000 genomes]
rs58116121	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58154704	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58170057	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58543156	0.85[EUR][1000 genomes]
rs59049485	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59101284	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59183509	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs59271728	1.00[EUR][1000 genomes]
rs59300141	1.00[EUR][1000 genomes]
rs59555429	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59752488	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59800170	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59849416	1.00[EUR][1000 genomes]
rs60448531	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60709727	0.92[EUR][1000 genomes]
rs60833404	1.00[EUR][1000 genomes]
rs60908817	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61330200	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61566702	1.00[EUR][1000 genomes]
rs61613297	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7031841	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7042607	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7043392	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7045388	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73497200	1.00[EUR][1000 genomes]
rs73503277	1.00[EUR][1000 genomes]
rs73503296	1.00[EUR][1000 genomes]
rs73505203	1.00[EUR][1000 genomes]
rs73505205	1.00[EUR][1000 genomes]
rs73505206	1.00[EUR][1000 genomes]
rs7849844	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7863280	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7866310	1.00[EUR][1000 genomes]
rs7870604	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7871207	0.80[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:90 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:93961200-93975600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr9:93969400-93972200	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr9:93969600-93974200	Enhancers	Pancreas	Pancrea
4	chr9:93969800-93976400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr9:93970200-93979200	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr9:93970200-93984000	Weak transcription	K562	blood
7	chr9:93970400-93972400	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr9:93970400-93976400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr9:93970400-94005400	Weak transcription	Aorta	Aorta
10	chr9:93970600-93976600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr9:93970800-93972800	Weak transcription	Fetal Kidney	kidney
12	chr9:93970800-93974400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr9:93970800-93974800	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr9:93970800-93974800	Weak transcription	Fetal Muscle Leg	muscle
15	chr9:93970800-93975400	Weak transcription	Brain Cingulate Gyrus	brain
16	chr9:93970800-93976200	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr9:93970800-93980800	Weak transcription	NHDF-Ad	bronchial
18	chr9:93970800-93981400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
19	chr9:93970800-93983600	Weak transcription	Brain Substantia Nigra	brain
20	chr9:93970800-93983800	Weak transcription	Brain Angular Gyrus	brain
21	chr9:93970800-93984200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr9:93970800-93985200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
23	chr9:93971000-93972800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr9:93971000-93972800	Enhancers	Liver	Liver
25	chr9:93971000-93972800	Weak transcription	HSMM	muscle
26	chr9:93971000-93974400	Weak transcription	Rectal Smooth Muscle	rectum
27	chr9:93971000-93974400	Enhancers	HepG2	liver
28	chr9:93971000-93974400	Weak transcription	Osteobl	bone
29	chr9:93971000-93974800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
30	chr9:93971000-93975400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
31	chr9:93971000-93979800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
32	chr9:93971000-93980800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
33	chr9:93971000-93981000	Weak transcription	Primary T helper cells fromperipheralblood	blood
34	chr9:93971000-93983200	Weak transcription	Colon Smooth Muscle	Colon
35	chr9:93971000-93984200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
36	chr9:93971000-94007800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr9:93971200-93972400	Weak transcription	Fetal Lung	lung
38	chr9:93971200-93973600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
39	chr9:93971200-93973800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
40	chr9:93971200-93973800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
41	chr9:93971200-93974200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr9:93971200-93974400	Weak transcription	Rectal Mucosa Donor 29	rectum
43	chr9:93971200-93979800	Weak transcription	Primary T cells from cord blood	blood
44	chr9:93971200-93980800	Weak transcription	Stomach Smooth Muscle	stomach
45	chr9:93971200-93981200	Weak transcription	Thymus	Thymus
46	chr9:93971200-93982400	Weak transcription	Brain Hippocampus Middle	brain
47	chr9:93971200-93983800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
48	chr9:93971400-93972400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr9:93971400-93972400	Weak transcription	Adipose Nuclei	Adipose
50	chr9:93971400-93972400	Weak transcription	Duodenum Mucosa	Duodenum

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