Variant report

Variant	rs7870604
Chromosome Location	chr9:94096215-94096216
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:94083711..94086738-chr9:94095670..94099237,3	K562	blood:
2	chr9:94094684..94097540-chr9:94102093..94106003,3	K562	blood:
3	chr9:94093775..94096685-chr9:94097839..94101388,3	MCF-7	breast:
4	chr9:94085941..94088500-chr9:94095338..94097321,2	K562	blood:
5	chr9:94092063..94094216-chr9:94095071..94096917,2	MCF-7	breast:

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10991804	0.92[EUR][1000 genomes]
rs10991805	0.92[EUR][1000 genomes]
rs10991806	0.92[EUR][1000 genomes]
rs10991817	1.00[EUR][1000 genomes]
rs10991818	1.00[EUR][1000 genomes]
rs10991822	1.00[EUR][1000 genomes]
rs10991830	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12236197	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12236200	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12236228	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16907283	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16907285	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs56673856	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56703453	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56878940	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56924073	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs57231133	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57252569	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs57417571	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs57891613	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs58116121	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58154704	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs58170057	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58543156	0.90[AFR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs59049485	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs59101284	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59183509	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59271728	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs59300141	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs59555429	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59752488	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59800170	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59849416	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs60448531	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs60709727	0.92[EUR][1000 genomes]
rs60833404	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs60908817	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61330200	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61566702	1.00[EUR][1000 genomes]
rs61613297	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7031841	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7042607	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7043392	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7045388	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73497200	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73503277	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73503296	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73505203	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73505205	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73505206	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7849844	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7863280	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7866310	1.00[EUR][1000 genomes]
rs7868771	0.89[YRI][hapmap]
rs7871207	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893570	chr9:93973938-94148084	Enhancers Genic enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv482877	chr9:93979351-94157734	Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv893571	chr9:94072113-94202927	Genic enhancers Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:106 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:94033800-94096400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr9:94052000-94119200	Weak transcription	Small Intestine	intestine
3	chr9:94053400-94103800	Weak transcription	HSMMtube	muscle
4	chr9:94059600-94103400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr9:94059800-94101400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
6	chr9:94065400-94101400	Weak transcription	K562	blood
7	chr9:94065600-94102000	Weak transcription	Hela-S3	cervix
8	chr9:94066400-94103400	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr9:94066800-94104000	Weak transcription	HSMM	muscle
10	chr9:94072800-94101200	Weak transcription	Primary T helper cells PMA-I stimulated	--
11	chr9:94074600-94103800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
12	chr9:94075800-94104200	Weak transcription	NHEK	skin
13	chr9:94080800-94101000	Weak transcription	Fetal Kidney	kidney
14	chr9:94080800-94102400	Weak transcription	Colonic Mucosa	Colon
15	chr9:94081000-94101000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
16	chr9:94082200-94104000	Weak transcription	Primary neutrophils fromperipheralblood	blood
17	chr9:94084400-94104200	Weak transcription	NHDF-Ad	bronchial
18	chr9:94087800-94103600	Weak transcription	A549	lung
19	chr9:94088600-94099800	Weak transcription	Sigmoid Colon	Sigmoid Colon
20	chr9:94090000-94103400	Weak transcription	Brain Angular Gyrus	brain
21	chr9:94090200-94099600	Weak transcription	Stomach Smooth Muscle	stomach
22	chr9:94090200-94101400	Weak transcription	Brain Cingulate Gyrus	brain
23	chr9:94090200-94104000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr9:94090200-94106200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
25	chr9:94090400-94096400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr9:94090400-94099400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr9:94090400-94099600	Weak transcription	Primary T cells fromperipheralblood	blood
28	chr9:94090400-94100600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
29	chr9:94090400-94101000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
30	chr9:94090400-94101400	Weak transcription	Brain Anterior Caudate	brain
31	chr9:94090400-94101400	Weak transcription	Rectal Mucosa Donor 31	rectum
32	chr9:94090400-94103400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
33	chr9:94090400-94103400	Weak transcription	Gastric	stomach
34	chr9:94090400-94104000	Weak transcription	NHLF	lung
35	chr9:94090400-94104200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr9:94090400-94104200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr9:94090400-94104200	Weak transcription	Aorta	Aorta
38	chr9:94090400-94104200	Weak transcription	Brain Inferior Temporal Lobe	brain
39	chr9:94090400-94104200	Weak transcription	Esophagus	oesophagus
40	chr9:94090600-94100000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
41	chr9:94090600-94100000	Weak transcription	Rectal Mucosa Donor 29	rectum
42	chr9:94090600-94100400	Weak transcription	HepG2	liver
43	chr9:94090600-94103200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
44	chr9:94090600-94103200	Weak transcription	Fetal Thymus	thymus
45	chr9:94090600-94103400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
46	chr9:94090600-94103400	Weak transcription	Spleen	Spleen
47	chr9:94090600-94104000	Weak transcription	Ovary	ovary
48	chr9:94090600-94108400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
49	chr9:94090600-94109400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
50	chr9:94090800-94099200	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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