Variant report

Variant	rs7045388
Chromosome Location	chr9:93969821-93969822
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:93957714..93959439-chr9:93968900..93970567,2	MCF-7	breast:
2	chr9:93954809..93958074-chr9:93968864..93971962,3	MCF-7	breast:
3	chr9:93964370..93966727-chr9:93969107..93971883,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-AUH-6	chr9:93968457-93972581	ENSG00000273381.1

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10991804	0.92[EUR][1000 genomes]
rs10991805	0.92[EUR][1000 genomes]
rs10991806	0.92[EUR][1000 genomes]
rs10991817	1.00[EUR][1000 genomes]
rs10991818	1.00[EUR][1000 genomes]
rs10991821	0.92[CHB][hapmap];0.91[CHD][hapmap];0.89[JPT][hapmap];0.90[ASN][1000 genomes]
rs10991822	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10991830	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12236197	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12236200	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12236228	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16907283	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16907285	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35278373	0.84[AFR][1000 genomes]
rs56673856	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56703453	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56878940	1.00[EUR][1000 genomes]
rs56924073	1.00[EUR][1000 genomes]
rs57231133	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57252569	1.00[EUR][1000 genomes]
rs57417571	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs57891613	1.00[EUR][1000 genomes]
rs58116121	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58154704	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58170057	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58543156	0.85[EUR][1000 genomes]
rs59049485	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59101284	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59183509	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs59271728	1.00[EUR][1000 genomes]
rs59300141	1.00[EUR][1000 genomes]
rs59555429	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59752488	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59800170	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59849416	1.00[EUR][1000 genomes]
rs60448531	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60709727	0.92[EUR][1000 genomes]
rs60833404	1.00[EUR][1000 genomes]
rs60908817	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61330200	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61566702	1.00[EUR][1000 genomes]
rs61613297	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7031841	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7042607	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7043392	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73497200	1.00[EUR][1000 genomes]
rs73503277	1.00[EUR][1000 genomes]
rs73503296	1.00[EUR][1000 genomes]
rs73505203	1.00[EUR][1000 genomes]
rs73505205	1.00[EUR][1000 genomes]
rs73505206	1.00[EUR][1000 genomes]
rs7849844	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7863280	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7866310	1.00[EUR][1000 genomes]
rs7870604	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7871207	0.80[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:89 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:93961200-93975600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr9:93968600-93971400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr9:93968800-93970000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr9:93968800-93970200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr9:93968800-93970400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr9:93968800-93970400	Enhancers	NHEK	skin
7	chr9:93968800-93971000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr9:93969200-93970000	Enhancers	Primary B cells from cord blood	blood
9	chr9:93969200-93970000	Enhancers	NHDF-Ad	bronchial
10	chr9:93969200-93971000	Enhancers	Cortex derived primary cultured neurospheres	brain
11	chr9:93969200-93971400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr9:93969200-93971400	Enhancers	Fetal Intestine Large	intestine
13	chr9:93969400-93970000	Enhancers	Primary hematopoietic stem cells	blood
14	chr9:93969400-93970000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr9:93969400-93970000	Enhancers	Brain Hippocampus Middle	brain
16	chr9:93969400-93970000	Enhancers	Osteobl	bone
17	chr9:93969400-93970200	Enhancers	Breast Myoepithelial Primary Cells	Breast
18	chr9:93969400-93970200	Enhancers	Primary T cells from cord blood	blood
19	chr9:93969400-93970200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
20	chr9:93969400-93970200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr9:93969400-93970400	Enhancers	NHLF	lung
22	chr9:93969400-93970800	Enhancers	HSMMtube	muscle
23	chr9:93969400-93971200	Enhancers	Primary T helper naive cells from peripheral blood	blood
24	chr9:93969400-93971400	Enhancers	Placenta	Placenta
25	chr9:93969400-93971600	Enhancers	Sigmoid Colon	Sigmoid Colon
26	chr9:93969400-93971800	Enhancers	Primary B cells from peripheral blood	blood
27	chr9:93969400-93972200	Enhancers	Primary monocytes fromperipheralblood	blood
28	chr9:93969600-93970000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
29	chr9:93969600-93970000	Enhancers	Brain Anterior Caudate	brain
30	chr9:93969600-93970000	Enhancers	Brain Substantia Nigra	brain
31	chr9:93969600-93970000	Enhancers	Duodenum Mucosa	Duodenum
32	chr9:93969600-93970000	Enhancers	Gastric	stomach
33	chr9:93969600-93970200	Enhancers	Thymus	Thymus
34	chr9:93969600-93970400	Enhancers	Aorta	Aorta
35	chr9:93969600-93970400	Enhancers	Fetal Thymus	thymus
36	chr9:93969600-93970600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
37	chr9:93969600-93970600	Enhancers	Adipose Nuclei	Adipose
38	chr9:93969600-93970800	Enhancers	Brain Angular Gyrus	brain
39	chr9:93969600-93970800	Enhancers	HMEC	breast
40	chr9:93969600-93971000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr9:93969600-93971000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr9:93969600-93971000	Enhancers	Primary T helper cells fromperipheralblood	blood
43	chr9:93969600-93971000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr9:93969600-93971000	Flanking Active TSS	Liver	Liver
45	chr9:93969600-93971000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
46	chr9:93969600-93971000	Enhancers	Fetal Heart	heart
47	chr9:93969600-93971200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
48	chr9:93969600-93971200	Enhancers	Fetal Lung	lung
49	chr9:93969600-93971400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr9:93969600-93971400	Enhancers	Primary neutrophils fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links