Variant report

Variant	rs10991821
Chromosome Location	chr9:93954920-93954921
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:15)
LncRNA
region (count:2)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:15 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:93876958..93880212-chr9:93954680..93957779,3	K562	blood:
2	chr9:93954564..93957663-chr9:94184637..94187181,3	MCF-7	breast:
3	chr9:93954538..93956167-chr9:94068967..94070519,2	K562	blood:
4	chr9:93954809..93958074-chr9:93968864..93971962,3	MCF-7	breast:
5	chr9:93954745..93957356-chr9:93959373..93965297,8	MCF-7	breast:
6	chr9:93953759..93956492-chr9:93979934..93981745,2	K562	blood:
7	chr9:93895358..93897035-chr9:93953953..93956875,2	MCF-7	breast:
8	chr9:93953851..93958747-chr9:94181568..94185373,5	K562	blood:
9	chr9:93953936..93955619-chr9:94071047..94073656,2	K562	blood:
10	chr9:93892652..93894878-chr9:93954710..93956598,3	MCF-7	breast:
11	chr9:93930340..93932709-chr9:93954014..93956744,2	K562	blood:
12	chr9:93800066..93802604-chr9:93953362..93956016,2	MCF-7	breast:
13	chr9:93952520..93956320-chr9:94184943..94188972,4	K562	blood:
14	chr9:93954102..93956914-chr9:94120904..94123589,2	K562	blood:
15	chr9:93938945..93942205-chr9:93953498..93957392,4	K562	blood:

(count:2 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SYK-5	chr9:93954840-93954967	NONHSAT133124
2	lnc-SYK-5	chr9:93954840-93954967	NONHSAT133131

No data

Variant related genes	Relation type
ENSG00000233081	Chromatin interaction
ENSG00000165030	Chromatin interaction
ENSG00000230147	Chromatin interaction

rs_ID	r²[population]
rs10991822	0.92[ASN][1000 genomes]
rs10991830	0.89[ASN][1000 genomes]
rs12236197	0.90[ASN][1000 genomes]
rs12236200	0.90[ASN][1000 genomes]
rs12236228	0.90[ASN][1000 genomes]
rs16907203	1.00[EUR][1000 genomes]
rs16907283	0.90[ASN][1000 genomes]
rs16907285	0.90[ASN][1000 genomes]
rs59555429	0.90[ASN][1000 genomes]
rs7042607	0.92[ASN][1000 genomes]
rs7045388	0.90[ASN][1000 genomes]

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:93941000-93957400	Weak transcription	Gastric	stomach
2	chr9:93950000-93955000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr9:93953000-93955400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
4	chr9:93953000-93955600	Enhancers	Primary hematopoietic stem cells	blood
5	chr9:93953200-93955000	Enhancers	Fetal Muscle Leg	muscle
6	chr9:93953200-93955200	Enhancers	Left Ventricle	heart
7	chr9:93953200-93955400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr9:93953200-93955400	Enhancers	Primary monocytes fromperipheralblood	blood
9	chr9:93953200-93955400	Enhancers	Primary B cells from peripheral blood	blood
10	chr9:93953200-93955400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
11	chr9:93953200-93955400	Enhancers	Fetal Muscle Trunk	muscle
12	chr9:93953200-93955400	Enhancers	Placenta	Placenta
13	chr9:93953200-93955400	Enhancers	Monocytes-CD14+_RO01746	blood
14	chr9:93953200-93955800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr9:93953400-93955400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr9:93953400-93955400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
17	chr9:93953400-93955400	Enhancers	Fetal Intestine Large	intestine
18	chr9:93953400-93955400	Enhancers	Fetal Lung	lung
19	chr9:93953400-93955400	Enhancers	Fetal Thymus	thymus
20	chr9:93953400-93955600	Enhancers	NHDF-Ad	bronchial
21	chr9:93953600-93955200	Enhancers	Primary neutrophils fromperipheralblood	blood
22	chr9:93953600-93955200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr9:93953600-93955400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr9:93953600-93955400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr9:93953600-93955400	Enhancers	Primary B cells from cord blood	blood
26	chr9:93953600-93955400	Enhancers	Fetal Intestine Small	intestine
27	chr9:93953800-93955000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr9:93953800-93955000	Enhancers	Right Ventricle	heart
29	chr9:93953800-93955200	Enhancers	Pancreas	Pancrea
30	chr9:93953800-93955200	Enhancers	Right Atrium	heart
31	chr9:93953800-93955200	Enhancers	Thymus	Thymus
32	chr9:93953800-93955400	Enhancers	Breast Myoepithelial Primary Cells	Breast
33	chr9:93953800-93955400	Enhancers	GM12878-XiMat	blood
34	chr9:93954000-93955200	Enhancers	Small Intestine	intestine
35	chr9:93954000-93955400	Enhancers	Adipose Nuclei	Adipose
36	chr9:93954000-93955400	Enhancers	Fetal Kidney	kidney
37	chr9:93954000-93955400	Enhancers	Fetal Stomach	stomach
38	chr9:93954000-93955600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr9:93954000-93955600	Enhancers	NHLF	lung
40	chr9:93954000-93959200	Enhancers	Sigmoid Colon	Sigmoid Colon
41	chr9:93954200-93955000	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
42	chr9:93954200-93955000	Enhancers	HSMM	muscle
43	chr9:93954200-93955200	Enhancers	Brain Substantia Nigra	brain
44	chr9:93954200-93955400	Enhancers	ES-I3 Cell Line	embryonic stem cell
45	chr9:93954200-93955400	Enhancers	Primary T cells fromperipheralblood	blood
46	chr9:93954200-93955400	Enhancers	Colonic Mucosa	Colon
47	chr9:93954200-93955400	Enhancers	Dnd41	blood
48	chr9:93954400-93955000	Enhancers	Brain Germinal Matrix	brain
49	chr9:93954400-93955200	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
50	chr9:93954400-93955200	Enhancers	Primary T regulatory cells fromperipheralblood	blood

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