Variant report

Variant	rs61566702
Chromosome Location	chr9:93947050-93947051
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SYK-5	chr9:93947044-93947134	NONHSAT133127
2	lnc-SYK-5	chr9:93946988-93947213	NONHSAT133125

rs_ID	r²[population]
rs10991804	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10991805	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10991806	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10991808	0.87[ASN][1000 genomes]
rs10991809	0.87[ASN][1000 genomes]
rs10991814	0.89[ASN][1000 genomes]
rs10991817	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10991818	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10991822	1.00[EUR][1000 genomes]
rs10991830	1.00[EUR][1000 genomes]
rs12236197	1.00[EUR][1000 genomes]
rs12236200	1.00[EUR][1000 genomes]
rs12236228	1.00[EUR][1000 genomes]
rs16907283	1.00[EUR][1000 genomes]
rs16907285	0.92[EUR][1000 genomes]
rs56673856	1.00[EUR][1000 genomes]
rs56703453	1.00[EUR][1000 genomes]
rs56878940	1.00[EUR][1000 genomes]
rs56924073	1.00[EUR][1000 genomes]
rs57231133	1.00[EUR][1000 genomes]
rs57252569	1.00[EUR][1000 genomes]
rs57417571	0.83[EUR][1000 genomes]
rs57891613	1.00[EUR][1000 genomes]
rs58116121	1.00[EUR][1000 genomes]
rs58154704	1.00[EUR][1000 genomes]
rs58170057	1.00[EUR][1000 genomes]
rs58543156	0.85[EUR][1000 genomes]
rs59049485	1.00[EUR][1000 genomes]
rs59101284	1.00[EUR][1000 genomes]
rs59183509	0.85[EUR][1000 genomes]
rs59271728	1.00[EUR][1000 genomes]
rs59300141	1.00[EUR][1000 genomes]
rs59555429	1.00[EUR][1000 genomes]
rs59752488	1.00[EUR][1000 genomes]
rs59800170	1.00[EUR][1000 genomes]
rs59849416	1.00[EUR][1000 genomes]
rs60448531	1.00[EUR][1000 genomes]
rs60709727	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs60833404	1.00[EUR][1000 genomes]
rs60908817	1.00[EUR][1000 genomes]
rs61330200	0.92[EUR][1000 genomes]
rs61613297	0.85[EUR][1000 genomes]
rs7031841	1.00[EUR][1000 genomes]
rs7042607	1.00[EUR][1000 genomes]
rs7043392	1.00[EUR][1000 genomes]
rs7045388	1.00[EUR][1000 genomes]
rs73497200	1.00[EUR][1000 genomes]
rs73503277	1.00[EUR][1000 genomes]
rs73503296	1.00[EUR][1000 genomes]
rs73505203	1.00[EUR][1000 genomes]
rs73505205	1.00[EUR][1000 genomes]
rs73505206	1.00[EUR][1000 genomes]
rs7849844	0.92[EUR][1000 genomes]
rs7863280	1.00[EUR][1000 genomes]
rs7866310	1.00[EUR][1000 genomes]
rs7870604	1.00[EUR][1000 genomes]
rs7871207	1.00[EUR][1000 genomes]

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:93940400-93949000	Weak transcription	Spleen	Spleen
2	chr9:93940800-93954000	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr9:93941000-93953400	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr9:93941000-93957400	Weak transcription	Gastric	stomach
5	chr9:93942200-93950000	Weak transcription	HSMM	muscle
6	chr9:93942400-93950000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr9:93942800-93948600	Weak transcription	Right Ventricle	heart
8	chr9:93942800-93948600	Weak transcription	NHLF	lung
9	chr9:93942800-93949000	Weak transcription	NHDF-Ad	bronchial
10	chr9:93943200-93948800	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr9:93943400-93948800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr9:93943400-93948800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr9:93943600-93948800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr9:93944600-93948800	Weak transcription	Esophagus	oesophagus
15	chr9:93944800-93948600	Weak transcription	K562	blood
16	chr9:93945400-93948600	Weak transcription	Hela-S3	cervix
17	chr9:93945400-93949000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr9:93945600-93948600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr9:93945600-93948800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr9:93945600-93949200	Weak transcription	Placenta	Placenta
21	chr9:93946200-93948800	Weak transcription	HMEC	breast
22	chr9:93946600-93948200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr9:93946600-93948800	Weak transcription	HUVEC	blood vessel
24	chr9:93946600-93949000	Weak transcription	Stomach Mucosa	stomach
25	chr9:93947000-93950000	Enhancers	HepG2	liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links