Variant report

Variant	rs10991809
Chromosome Location	chr9:93946555-93946556
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10512211	0.91[CEU][hapmap]
rs10991804	0.83[ASN][1000 genomes]
rs10991805	0.81[ASN][1000 genomes]
rs10991806	0.81[ASN][1000 genomes]
rs10991808	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10991810	0.89[AFR][1000 genomes]
rs10991814	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10991817	0.85[ASN][1000 genomes]
rs10991818	0.85[ASN][1000 genomes]
rs17579908	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs4628374	0.88[EUR][1000 genomes]
rs58307373	0.88[EUR][1000 genomes]
rs59581968	0.84[EUR][1000 genomes]
rs60953089	0.84[EUR][1000 genomes]
rs61566702	0.87[ASN][1000 genomes]
rs73650963	0.84[EUR][1000 genomes]
rs773519	0.88[CHB][hapmap];0.84[JPT][hapmap]
rs7860510	0.84[CEU][hapmap]

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:93940400-93949000	Weak transcription	Spleen	Spleen
2	chr9:93940800-93954000	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr9:93941000-93953400	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr9:93941000-93957400	Weak transcription	Gastric	stomach
5	chr9:93942200-93950000	Weak transcription	HSMM	muscle
6	chr9:93942400-93950000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr9:93942800-93948600	Weak transcription	Right Ventricle	heart
8	chr9:93942800-93948600	Weak transcription	NHLF	lung
9	chr9:93942800-93949000	Weak transcription	NHDF-Ad	bronchial
10	chr9:93943200-93948800	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr9:93943400-93948800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr9:93943400-93948800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr9:93943600-93948800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr9:93944600-93946600	Enhancers	HepG2	liver
15	chr9:93944600-93948800	Weak transcription	Esophagus	oesophagus
16	chr9:93944800-93948600	Weak transcription	K562	blood
17	chr9:93945400-93948600	Weak transcription	Hela-S3	cervix
18	chr9:93945400-93949000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr9:93945600-93948600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr9:93945600-93948800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr9:93945600-93949200	Weak transcription	Placenta	Placenta
22	chr9:93946000-93946600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr9:93946000-93946600	Enhancers	Stomach Mucosa	stomach
24	chr9:93946200-93946600	Enhancers	HUVEC	blood vessel
25	chr9:93946200-93947000	Weak transcription	Fetal Intestine Small	intestine
26	chr9:93946200-93948800	Weak transcription	HMEC	breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links