Variant report
| Variant | rs7860510 |
|---|---|
| Chromosome Location | chr9:94128796-94128797 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:1)
- CpG islands (count:0)
- Chromatin interactive region (count:5)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:1 , 50 per page) page:
1
| No data |
(count:5 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr9:94117423..94119022-chr9:94128192..94130184,2 | MCF-7 | breast: | |
| 2 | chr9:94122694..94125118-chr9:94127022..94132461,6 | MCF-7 | breast: | |
| 3 | chr9:94124605..94126773-chr9:94127797..94129464,2 | K562 | blood: | |
| 4 | chr9:94127807..94131251-chr9:94131803..94134824,3 | K562 | blood: | |
| 5 | chr9:94123933..94127271-chr9:94127797..94131157,4 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| AUH | TF binding region |
| ENSG00000148090 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs10512210 | 0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10512211 | 0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10991814 | 0.84[CEU][hapmap] |
| rs16907277 | 0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs16907297 | 0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs16907323 | 0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17579908 | 0.84[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs2282145 | 1.00[CHB][hapmap] |
| rs3827826 | 0.93[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs4628374 | 0.81[EUR][1000 genomes] |
| rs58307373 | 0.81[EUR][1000 genomes] |
| rs59581968 | 0.83[EUR][1000 genomes] |
| rs60953089 | 0.83[EUR][1000 genomes] |
| rs61021072 | 0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6479335 | 1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7029087 | 0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7043552 | 0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs73650963 | 0.83[EUR][1000 genomes] |
| rs7852934 | 1.00[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs7856555 | 0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7856668 | 0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7857020 | 0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs7866425 | 0.80[EUR][1000 genomes] |
| rs7869154 | 0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs7874056 | 1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv893570 | chr9:93973938-94148084 | Enhancers Genic enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 9 gene(s) | inside rSNPs | diseases |
| 2 | nsv482877 | chr9:93979351-94157734 | Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 3 | nsv893571 | chr9:94072113-94202927 | Genic enhancers Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 17 gene(s) | inside rSNPs | diseases |
mRNA abundance (count:1)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs7860510 | WTAP | trans | lymphoblastoid | RTeQTL |
Chromatin state (count:0 , 50 per page) page:
| No data |
