Variant report

Variant	rs73650963
Chromosome Location	chr9:93943033-93943034
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RCOR1	chr9:93941428-93943042	IMR90	lung:	n/a	n/a

Variant related genes	Relation type
ENSG00000229694	TF binding region

rs_ID	r²[population]
rs10512210	0.87[EUR][1000 genomes]
rs10512211	0.84[EUR][1000 genomes]
rs10991808	0.84[EUR][1000 genomes]
rs10991809	0.84[EUR][1000 genomes]
rs10991814	0.81[EUR][1000 genomes]
rs16907277	0.93[EUR][1000 genomes]
rs16907297	0.91[EUR][1000 genomes]
rs16907323	0.90[EUR][1000 genomes]
rs17579908	0.98[EUR][1000 genomes]
rs3827826	0.88[EUR][1000 genomes]
rs59581968	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60953089	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs61021072	0.87[EUR][1000 genomes]
rs6479335	0.84[EUR][1000 genomes]
rs7029087	0.87[EUR][1000 genomes]
rs7043552	0.90[EUR][1000 genomes]
rs7852934	0.84[EUR][1000 genomes]
rs7856555	0.91[EUR][1000 genomes]
rs7856668	0.85[EUR][1000 genomes]
rs7857020	0.87[EUR][1000 genomes]
rs7860510	0.83[EUR][1000 genomes]
rs7866425	0.85[EUR][1000 genomes]
rs7869154	0.87[EUR][1000 genomes]
rs7874056	0.84[EUR][1000 genomes]

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:93932200-93944000	Weak transcription	K562	blood
2	chr9:93939400-93943400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr9:93939800-93943200	Enhancers	Placenta Amnion	Placenta Amnion
4	chr9:93940000-93944600	Weak transcription	HepG2	liver
5	chr9:93940400-93949000	Weak transcription	Spleen	Spleen
6	chr9:93940800-93946000	Weak transcription	Stomach Mucosa	stomach
7	chr9:93940800-93954000	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr9:93941000-93944400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr9:93941000-93944800	Weak transcription	Primary B cells from peripheral blood	blood
10	chr9:93941000-93953400	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr9:93941000-93957400	Weak transcription	Gastric	stomach
12	chr9:93942000-93944400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr9:93942200-93950000	Weak transcription	HSMM	muscle
14	chr9:93942400-93943400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr9:93942400-93950000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr9:93942600-93943200	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr9:93942600-93943200	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr9:93942600-93944000	Weak transcription	Esophagus	oesophagus
19	chr9:93942800-93943600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr9:93942800-93944000	Weak transcription	HMEC	breast
21	chr9:93942800-93948600	Weak transcription	Right Ventricle	heart
22	chr9:93942800-93948600	Weak transcription	NHLF	lung
23	chr9:93942800-93949000	Weak transcription	NHDF-Ad	bronchial
24	chr9:93943000-93943200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links