Variant report

Variant	rs17579908
Chromosome Location	chr9:93948636-93948637
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:93939078..93941817-chr9:93947414..93952988,4	K562	blood:
2	chr9:93948011..93949691-chr9:93951858..93953377,2	MCF-7	breast:
3	chr9:93941910..93945011-chr9:93947085..93949384,3	K562	blood:
4	chr9:93944150..93946798-chr9:93947208..93949321,3	MCF-7	breast:
5	chr9:93943125..93945668-chr9:93947670..93950662,2	K562	blood:

Variant related genes	Relation type
ENSG00000229694	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10512210	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10512211	0.91[CEU][hapmap];1.00[CHB][hapmap];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10991808	0.83[EUR][1000 genomes]
rs10991809	0.83[EUR][1000 genomes]
rs10991814	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs16907277	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16907297	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16907323	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2282145	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs3827826	0.87[EUR][1000 genomes]
rs59581968	0.98[EUR][1000 genomes]
rs60953089	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61021072	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6479335	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7029087	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7043552	0.88[EUR][1000 genomes]
rs73650963	0.98[EUR][1000 genomes]
rs7852934	0.83[EUR][1000 genomes]
rs7856555	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7856668	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7857020	0.85[EUR][1000 genomes]
rs7860510	0.84[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7866425	0.84[EUR][1000 genomes]
rs7869154	0.85[EUR][1000 genomes]
rs7874056	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:93940400-93949000	Weak transcription	Spleen	Spleen
2	chr9:93940800-93954000	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr9:93941000-93953400	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr9:93941000-93957400	Weak transcription	Gastric	stomach
5	chr9:93942200-93950000	Weak transcription	HSMM	muscle
6	chr9:93942400-93950000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr9:93942800-93949000	Weak transcription	NHDF-Ad	bronchial
8	chr9:93943200-93948800	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr9:93943400-93948800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr9:93943400-93948800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr9:93943600-93948800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr9:93944600-93948800	Weak transcription	Esophagus	oesophagus
13	chr9:93945400-93949000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr9:93945600-93948800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr9:93945600-93949200	Weak transcription	Placenta	Placenta
16	chr9:93946200-93948800	Weak transcription	HMEC	breast
17	chr9:93946600-93948800	Weak transcription	HUVEC	blood vessel
18	chr9:93946600-93949000	Weak transcription	Stomach Mucosa	stomach
19	chr9:93947000-93950000	Enhancers	HepG2	liver
20	chr9:93947600-93949000	Enhancers	Fetal Lung	lung
21	chr9:93947600-93950200	Enhancers	Fetal Intestine Large	intestine
22	chr9:93947800-93950200	Enhancers	Fetal Intestine Small	intestine
23	chr9:93948200-93950600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr9:93948400-93950400	Enhancers	Skeletal Muscle Male	skeletal muscle
25	chr9:93948600-93949000	Enhancers	Psoas Muscle	Psoas
26	chr9:93948600-93949600	Enhancers	K562	blood
27	chr9:93948600-93949800	Enhancers	Hela-S3	cervix
28	chr9:93948600-93950200	Enhancers	Right Atrium	heart
29	chr9:93948600-93950400	Enhancers	Right Ventricle	heart
30	chr9:93948600-93950600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr9:93948600-93950600	Enhancers	Left Ventricle	heart
32	chr9:93948600-93950800	Enhancers	NHLF	lung
33	chr9:93948600-93951000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links