Variant report

Variant	rs16907384
Chromosome Location	chr9:94087793-94087794
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:94083958..94089590-chr9:94090031..94094657,6	K562	blood:
2	chr9:94087425..94089272-chr9:94102729..94105618,2	K562	blood:
3	chr9:94085941..94088500-chr9:94095338..94097321,2	K562	blood:
4	chr9:94079615..94081294-chr9:94087767..94090304,2	K562	blood:

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs1022141	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10512209	1.00[AFR][1000 genomes]
rs10991842	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10991844	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[JPT][hapmap];1.00[AFR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10991845	1.00[AFR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10991846	1.00[AFR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10991847	1.00[AFR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10991852	1.00[AFR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10991854	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[JPT][hapmap];1.00[AFR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10991856	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10991857	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10991863	1.00[AFR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10991867	1.00[AFR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10991868	1.00[AFR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10991871	1.00[AFR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10991874	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10991876	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10991879	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10991883	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10991884	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10991885	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10991886	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10991887	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10991892	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10991893	0.82[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs10991894	0.87[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs10991895	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs10991896	0.85[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10991897	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10991901	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10991903	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10991904	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10991906	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10991921	0.84[JPT][hapmap]
rs12238387	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs16907250	1.00[AFR][1000 genomes]
rs16907269	0.83[ASN][1000 genomes]
rs16907273	0.83[ASN][1000 genomes]
rs16907280	1.00[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs16907293	1.00[AFR][1000 genomes]
rs16907311	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[JPT][hapmap];1.00[AFR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs16907447	0.83[JPT][hapmap]
rs2281922	1.00[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs2292365	1.00[AFR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3811122	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3811124	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3851540	1.00[AFR][1000 genomes]
rs4430195	1.00[AFR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4537426	1.00[AFR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7868771	1.00[CEU][hapmap];0.85[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893570	chr9:93973938-94148084	Enhancers Genic enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv482877	chr9:93979351-94157734	Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv893571	chr9:94072113-94202927	Genic enhancers Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:104 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:94033800-94096400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr9:94039200-94089800	Weak transcription	Esophagus	oesophagus
3	chr9:94052000-94119200	Weak transcription	Small Intestine	intestine
4	chr9:94053400-94103800	Weak transcription	HSMMtube	muscle
5	chr9:94055600-94089600	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr9:94056400-94089400	Weak transcription	Brain Cingulate Gyrus	brain
7	chr9:94057600-94089400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr9:94058000-94088000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
9	chr9:94058400-94089400	Weak transcription	Brain Angular Gyrus	brain
10	chr9:94058800-94091800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
11	chr9:94059200-94089400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr9:94059600-94103400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr9:94059800-94089400	Weak transcription	Rectal Mucosa Donor 31	rectum
14	chr9:94059800-94089400	Weak transcription	Dnd41	blood
15	chr9:94059800-94089600	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr9:94059800-94101400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
17	chr9:94060000-94089200	Weak transcription	Primary B cells from peripheral blood	blood
18	chr9:94060200-94089400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
19	chr9:94060400-94089400	Weak transcription	Fetal Thymus	thymus
20	chr9:94061000-94089600	Weak transcription	Primary T cells fromperipheralblood	blood
21	chr9:94063400-94089400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
22	chr9:94064000-94089400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
23	chr9:94064000-94089400	Weak transcription	Ovary	ovary
24	chr9:94065400-94089400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
25	chr9:94065400-94101400	Weak transcription	K562	blood
26	chr9:94065600-94089400	Weak transcription	Brain Anterior Caudate	brain
27	chr9:94065600-94089400	Weak transcription	Stomach Smooth Muscle	stomach
28	chr9:94065600-94091400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr9:94065600-94102000	Weak transcription	Hela-S3	cervix
30	chr9:94066000-94089600	Weak transcription	Duodenum Smooth Muscle	Duodenum
31	chr9:94066400-94103400	Weak transcription	Muscle Satellite Cultured Cells	--
32	chr9:94066600-94089600	Weak transcription	HUES48 Cell Line	embryonic stem cell
33	chr9:94066800-94089400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
34	chr9:94066800-94089400	Weak transcription	NHLF	lung
35	chr9:94066800-94104000	Weak transcription	HSMM	muscle
36	chr9:94067800-94094400	Weak transcription	Colon Smooth Muscle	Colon
37	chr9:94068400-94089200	Weak transcription	Skeletal Muscle Male	skeletal muscle
38	chr9:94068600-94089200	Weak transcription	Brain Hippocampus Middle	brain
39	chr9:94069000-94089800	Weak transcription	Aorta	Aorta
40	chr9:94069200-94096200	Weak transcription	Psoas Muscle	Psoas
41	chr9:94072400-94089400	Weak transcription	Osteobl	bone
42	chr9:94072600-94088000	Weak transcription	Skeletal Muscle Female	skeletal muscle
43	chr9:94072600-94089400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
44	chr9:94072600-94089600	Weak transcription	Fetal Brain Female	brain
45	chr9:94072800-94089400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
46	chr9:94072800-94089400	Weak transcription	Duodenum Mucosa	Duodenum
47	chr9:94072800-94101200	Weak transcription	Primary T helper cells PMA-I stimulated	--
48	chr9:94073200-94089200	Weak transcription	Adipose Nuclei	Adipose
49	chr9:94073200-94089400	Weak transcription	Primary hematopoietic stem cells	blood
50	chr9:94074200-94089400	Weak transcription	Rectal Mucosa Donor 29	rectum

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