Variant report

Variant	rs16907293
Chromosome Location	chr9:94007040-94007041
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:94003518..94005912-chr9:94006715..94009331,2	MCF-7	breast:
2	chr9:94006388..94008643-chr9:94010253..94011944,2	MCF-7	breast:
3	chr9:94001722..94003904-chr9:94005920..94007942,2	K562	blood:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs1022141	1.00[AFR][1000 genomes]
rs10512209	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10991844	1.00[AFR][1000 genomes]
rs10991845	1.00[AFR][1000 genomes]
rs10991846	1.00[AFR][1000 genomes]
rs10991847	1.00[AFR][1000 genomes]
rs10991852	1.00[AFR][1000 genomes]
rs10991854	1.00[AFR][1000 genomes]
rs10991863	1.00[AFR][1000 genomes]
rs10991867	1.00[AFR][1000 genomes]
rs10991868	1.00[AFR][1000 genomes]
rs10991871	1.00[AFR][1000 genomes]
rs10991874	1.00[AFR][1000 genomes]
rs10991876	1.00[AFR][1000 genomes]
rs10991883	1.00[AFR][1000 genomes]
rs10991884	1.00[AFR][1000 genomes]
rs10991885	1.00[AFR][1000 genomes]
rs10991886	1.00[AFR][1000 genomes]
rs10991887	1.00[CEU][hapmap];1.00[AFR][1000 genomes]
rs10991892	1.00[AFR][1000 genomes]
rs10991893	1.00[AFR][1000 genomes]
rs10991894	1.00[AFR][1000 genomes]
rs10991895	1.00[AFR][1000 genomes]
rs10991896	0.82[CHB][hapmap];1.00[AFR][1000 genomes]
rs10991897	1.00[AFR][1000 genomes]
rs10991901	1.00[AFR][1000 genomes]
rs10991903	1.00[AFR][1000 genomes]
rs10991904	1.00[AFR][1000 genomes]
rs10991906	1.00[AFR][1000 genomes]
rs16907250	1.00[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs16907280	1.00[AFR][1000 genomes]
rs16907311	1.00[AFR][1000 genomes]
rs16907384	1.00[AFR][1000 genomes]
rs2281922	1.00[AFR][1000 genomes]
rs2292365	1.00[AFR][1000 genomes]
rs2387099	0.83[ASN][1000 genomes]
rs3851540	1.00[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs4430195	1.00[AFR][1000 genomes]
rs4537426	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893570	chr9:93973938-94148084	Enhancers Genic enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv482877	chr9:93979351-94157734	Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:93971000-94007800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr9:93971400-94009400	Weak transcription	Spleen	Spleen
3	chr9:93971800-94008000	Weak transcription	Primary B cells from peripheral blood	blood
4	chr9:93972800-94009200	Weak transcription	Brain Germinal Matrix	brain
5	chr9:93980600-94007600	Weak transcription	Primary B cells from cord blood	blood
6	chr9:93981600-94008000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr9:93981600-94008000	Weak transcription	Esophagus	oesophagus
8	chr9:93982600-94008200	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr9:93982800-94032400	Weak transcription	Ovary	ovary
10	chr9:93983000-94008200	Weak transcription	Duodenum Mucosa	Duodenum
11	chr9:93983000-94009000	Weak transcription	Fetal Lung	lung
12	chr9:93983000-94027000	Weak transcription	Fetal Intestine Large	intestine
13	chr9:93983000-94054000	Weak transcription	Primary hematopoietic stem cells	blood
14	chr9:93983200-94015400	Weak transcription	Thymus	Thymus
15	chr9:93983200-94015800	Weak transcription	Rectal Mucosa Donor 31	rectum
16	chr9:93983200-94027800	Weak transcription	Adipose Nuclei	Adipose
17	chr9:93983800-94010800	Weak transcription	Stomach Smooth Muscle	stomach
18	chr9:93984000-94052200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
19	chr9:93984000-94054600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
20	chr9:93984200-94024000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr9:93984400-94026200	Weak transcription	Primary T cells from cord blood	blood
22	chr9:93993400-94008400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
23	chr9:93995600-94009200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr9:93995800-94018600	Weak transcription	Fetal Intestine Small	intestine
25	chr9:93995800-94052400	Weak transcription	Fetal Stomach	stomach
26	chr9:93996800-94012400	Weak transcription	HSMMtube	muscle
27	chr9:93999200-94015800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
28	chr9:94000800-94011200	Weak transcription	Fetal Muscle Trunk	muscle
29	chr9:94001000-94007600	Weak transcription	NHLF	lung
30	chr9:94001200-94007400	Weak transcription	Primary T cells fromperipheralblood	blood
31	chr9:94001400-94008000	Weak transcription	Brain Substantia Nigra	brain
32	chr9:94001800-94008000	Weak transcription	Brain Angular Gyrus	brain
33	chr9:94002000-94007400	Weak transcription	Lung	lung
34	chr9:94002200-94007600	Weak transcription	Stomach Mucosa	stomach
35	chr9:94002800-94032600	Weak transcription	Placenta	Placenta
36	chr9:94003200-94007600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr9:94003400-94007400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
38	chr9:94003600-94007800	Weak transcription	Right Ventricle	heart
39	chr9:94004000-94008000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr9:94004200-94007600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
41	chr9:94004200-94008000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
42	chr9:94004600-94007400	Weak transcription	Left Ventricle	heart
43	chr9:94004600-94007600	Weak transcription	Primary T helper cells fromperipheralblood	blood
44	chr9:94004600-94007800	Weak transcription	Sigmoid Colon	Sigmoid Colon
45	chr9:94004600-94008000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr9:94004600-94008000	Weak transcription	Gastric	stomach
47	chr9:94004600-94008000	Weak transcription	Pancreas	Pancrea
48	chr9:94004600-94008000	Weak transcription	Right Atrium	heart
49	chr9:94004600-94008200	Weak transcription	Brain Hippocampus Middle	brain
50	chr9:94004600-94009000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

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