Variant report

Variant	rs1022141
Chromosome Location	chr9:94079611-94079612
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:94077918..94080792-chr9:94096846..94099494,2	MCF-7	breast:

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10512209	1.00[ASW][hapmap];0.87[CHD][hapmap];0.90[MEX][hapmap];1.00[AFR][1000 genomes]
rs10991842	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10991844	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10991845	1.00[AFR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10991846	1.00[AFR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10991847	1.00[AFR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10991852	1.00[AFR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10991854	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10991856	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10991857	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10991863	1.00[AFR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10991867	1.00[AFR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10991868	1.00[AFR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10991871	1.00[AFR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10991874	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10991876	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10991879	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10991883	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10991884	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10991885	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10991886	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10991887	1.00[CHB][hapmap];0.89[JPT][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10991892	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10991893	0.82[CEU][hapmap];0.93[CHB][hapmap];0.89[JPT][hapmap];1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs10991894	0.87[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs10991895	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs10991896	0.85[CEU][hapmap];0.84[JPT][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10991897	0.82[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10991901	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.90[JPT][hapmap];1.00[MEX][hapmap];0.84[TSI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10991903	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10991904	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.90[JPT][hapmap];1.00[MEX][hapmap];0.84[TSI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10991906	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.90[JPT][hapmap];1.00[MEX][hapmap];0.84[TSI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12238387	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16907250	1.00[AFR][1000 genomes]
rs16907269	0.87[ASN][1000 genomes]
rs16907273	0.87[ASN][1000 genomes]
rs16907280	1.00[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs16907293	1.00[AFR][1000 genomes]
rs16907311	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16907384	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2281922	1.00[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs2292365	1.00[AFR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3811122	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3811124	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3851540	1.00[AFR][1000 genomes]
rs4430195	1.00[AFR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4537426	1.00[AFR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7868771	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893570	chr9:93973938-94148084	Enhancers Genic enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv482877	chr9:93979351-94157734	Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv893571	chr9:94072113-94202927	Genic enhancers Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:103 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:94029400-94080000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr9:94033800-94096400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr9:94039200-94089800	Weak transcription	Esophagus	oesophagus
4	chr9:94052000-94119200	Weak transcription	Small Intestine	intestine
5	chr9:94053400-94103800	Weak transcription	HSMMtube	muscle
6	chr9:94055600-94089600	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr9:94056400-94089400	Weak transcription	Brain Cingulate Gyrus	brain
8	chr9:94057600-94086400	Weak transcription	Fetal Brain Male	brain
9	chr9:94057600-94089400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr9:94058000-94088000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
11	chr9:94058400-94080400	Weak transcription	Fetal Kidney	kidney
12	chr9:94058400-94089400	Weak transcription	Brain Angular Gyrus	brain
13	chr9:94058800-94091800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
14	chr9:94059200-94089400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr9:94059600-94080400	Weak transcription	Fetal Muscle Trunk	muscle
16	chr9:94059600-94080600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr9:94059600-94082000	Weak transcription	Gastric	stomach
18	chr9:94059600-94103400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr9:94059800-94089400	Weak transcription	Rectal Mucosa Donor 31	rectum
20	chr9:94059800-94089400	Weak transcription	Dnd41	blood
21	chr9:94059800-94089600	Weak transcription	Brain Inferior Temporal Lobe	brain
22	chr9:94059800-94101400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
23	chr9:94060000-94080200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
24	chr9:94060000-94080600	Weak transcription	Liver	Liver
25	chr9:94060000-94089200	Weak transcription	Primary B cells from peripheral blood	blood
26	chr9:94060200-94089400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
27	chr9:94060400-94089400	Weak transcription	Fetal Thymus	thymus
28	chr9:94061000-94084600	Weak transcription	Primary T helper cells fromperipheralblood	blood
29	chr9:94061000-94089600	Weak transcription	Primary T cells fromperipheralblood	blood
30	chr9:94063400-94089400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
31	chr9:94064000-94089400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
32	chr9:94064000-94089400	Weak transcription	Ovary	ovary
33	chr9:94065400-94082200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
34	chr9:94065400-94089400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
35	chr9:94065400-94101400	Weak transcription	K562	blood
36	chr9:94065600-94089400	Weak transcription	Brain Anterior Caudate	brain
37	chr9:94065600-94089400	Weak transcription	Stomach Smooth Muscle	stomach
38	chr9:94065600-94091400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr9:94065600-94102000	Weak transcription	Hela-S3	cervix
40	chr9:94066000-94089600	Weak transcription	Duodenum Smooth Muscle	Duodenum
41	chr9:94066400-94103400	Weak transcription	Muscle Satellite Cultured Cells	--
42	chr9:94066600-94089600	Weak transcription	HUES48 Cell Line	embryonic stem cell
43	chr9:94066800-94083400	Weak transcription	NHDF-Ad	bronchial
44	chr9:94066800-94087200	Weak transcription	HUES64 Cell Line	embryonic stem cell
45	chr9:94066800-94089400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
46	chr9:94066800-94089400	Weak transcription	NHLF	lung
47	chr9:94066800-94104000	Weak transcription	HSMM	muscle
48	chr9:94067800-94094400	Weak transcription	Colon Smooth Muscle	Colon
49	chr9:94068400-94081800	Weak transcription	Left Ventricle	heart
50	chr9:94068400-94089200	Weak transcription	Skeletal Muscle Male	skeletal muscle

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