Variant report

Variant	rs3853677
Chromosome Location	chr11:57894384-57894385
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:57893156..57895554-chr11:57899477..57901378,2	K562	blood:

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10750878	0.80[JPT][hapmap]
rs10750880	0.90[JPT][hapmap];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10750881	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10750882	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs10750883	1.00[JPT][hapmap]
rs10750886	0.94[CHB][hapmap];0.80[JPT][hapmap]
rs10792131	0.81[AFR][1000 genomes]
rs10792133	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10792135	0.84[CHB][hapmap];1.00[JPT][hapmap]
rs10792139	0.82[CHB][hapmap]
rs10896696	0.90[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs10896705	0.84[CHB][hapmap];0.90[JPT][hapmap]
rs11229247	0.85[CHB][hapmap];0.95[JPT][hapmap];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11229250	0.85[CHB][hapmap];0.95[JPT][hapmap]
rs1123307	0.90[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs12226617	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12363350	0.90[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1447165	0.83[JPT][hapmap]
rs1447168	0.95[CHB][hapmap];0.84[JPT][hapmap]
rs1447169	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs1451326	0.90[CHB][hapmap];0.90[JPT][hapmap]
rs1900536	0.90[CHB][hapmap];0.80[JPT][hapmap]
rs2003375	0.90[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs2044856	0.81[JPT][hapmap]
rs2167358	0.85[EUR][1000 genomes]
rs2441970	0.81[JPT][hapmap]
rs2443441	0.80[JPT][hapmap]
rs2443447	0.80[JPT][hapmap]
rs3974323	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs4939176	0.80[JPT][hapmap];0.85[EUR][1000 genomes]
rs4939181	0.81[JPT][hapmap]
rs4939182	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs6591455	0.89[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7109726	0.84[CHB][hapmap];0.95[JPT][hapmap]
rs7110748	0.84[CHB][hapmap];1.00[JPT][hapmap]
rs7117711	0.90[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7118536	0.80[JPT][hapmap]
rs716945	0.90[CHB][hapmap];0.90[JPT][hapmap]
rs921133	0.80[JPT][hapmap]
rs976429	0.85[EUR][1000 genomes]
rs976430	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044030	chr11:57073395-58035564	Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	136 gene(s)	inside rSNPs	diseases
2	nsv541047	chr11:57073395-58035564	Active TSS Enhancers Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	136 gene(s)	inside rSNPs	diseases
3	nsv1054205	chr11:57544264-58358509	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
4	nsv897589	chr11:57623815-58052357	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
5	nsv832165	chr11:57806024-58009076	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
6	nsv832166	chr11:57852031-58006189	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
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