Variant report

Variant	rs921133
Chromosome Location	chr11:57795226-57795227
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	GATA3	chr11:57794931-57795278	T-47D	breast:	n/a	chr11:57795132-57795140
2	RCOR1	chr11:57794428-57795623	IMR90	lung:	n/a	n/a
3	STAT3	chr11:57794742-57795314	MCF10A-Er-Src	breast:	n/a	n/a
4	GATA3	chr11:57794828-57795375	T-47D	breast:	n/a	chr11:57795132-57795140
5	FOS	chr11:57794861-57795229	MCF10A-Er-Src	breast:	n/a	n/a
6	STAT3	chr11:57794802-57795234	MCF10A-Er-Src	breast:	n/a	n/a
7	STAT3	chr11:57794817-57795283	MCF10A-Er-Src	breast:	n/a	n/a
8	FOS	chr11:57794895-57795234	MCF10A-Er-Src	breast:	n/a	n/a
9	GATA2	chr11:57794929-57795260	HUVEC	blood vessel:	n/a	chr11:57795132-57795140
10	CEBPB	chr11:57794716-57795280	IMR90	lung:	n/a	n/a

Variant related genes	Relation type
OR6Q1	TF binding region
RNU6-899P	TF binding region

Extended variants
information (count: 85 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:80)

rs_ID	r²[population]
rs1013447	0.84[CEU][hapmap];0.91[JPT][hapmap];0.81[YRI][hapmap]
rs10750876	0.82[CEU][hapmap];0.89[GIH][hapmap];0.81[JPT][hapmap];0.84[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs10750877	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10750878	0.94[CEU][hapmap];0.87[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[TSI][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10750879	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10750880	0.88[CEU][hapmap];0.86[JPT][hapmap]
rs10750882	0.88[CEU][hapmap];0.83[CHB][hapmap];0.81[CHD][hapmap];0.89[GIH][hapmap];0.83[JPT][hapmap];0.81[TSI][hapmap]
rs10750883	0.82[CEU][hapmap];0.83[JPT][hapmap]
rs10792126	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10792127	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10792128	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10792129	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10792130	0.84[CEU][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];0.85[TSI][hapmap];0.81[YRI][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10792131	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10792132	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10792135	0.88[CEU][hapmap];0.82[CHB][hapmap];0.82[JPT][hapmap]
rs10896689	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10896690	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10896692	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10896693	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10896696	0.94[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs11229221	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11229236	0.84[CEU][hapmap];0.91[JPT][hapmap];0.81[YRI][hapmap]
rs11229237	0.82[CEU][hapmap];0.91[JPT][hapmap];0.81[YRI][hapmap]
rs11229247	0.88[CEU][hapmap];0.83[CHB][hapmap];0.83[JPT][hapmap]
rs11229250	0.88[CEU][hapmap];0.83[CHB][hapmap];0.83[JPT][hapmap]
rs1123196	0.84[CEU][hapmap];0.90[JPT][hapmap];0.80[YRI][hapmap]
rs1123307	0.94[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs12363350	0.88[CEU][hapmap];0.83[CHB][hapmap];0.84[CHD][hapmap];0.89[GIH][hapmap];0.83[JPT][hapmap];0.81[TSI][hapmap]
rs1447169	0.88[CEU][hapmap];0.83[CHB][hapmap];0.81[CHD][hapmap];0.89[GIH][hapmap];0.83[JPT][hapmap];0.81[TSI][hapmap]
rs1510419	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs1868043	0.94[CEU][hapmap];0.90[CHB][hapmap];0.84[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.88[TSI][hapmap];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2003375	0.94[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs2100110	0.84[CEU][hapmap];0.91[JPT][hapmap];0.81[YRI][hapmap]
rs2167357	0.84[CEU][hapmap]
rs2167358	0.94[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs2218598	0.84[CEU][hapmap];0.91[JPT][hapmap];0.81[YRI][hapmap]
rs2441950	0.82[JPT][hapmap]
rs2441958	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2441960	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2441961	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2441979	0.84[CEU][hapmap];0.98[GIH][hapmap];0.91[JPT][hapmap];0.85[TSI][hapmap];0.81[YRI][hapmap]
rs2513705	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2513713	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2513726	0.84[CEU][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];0.85[TSI][hapmap];0.81[YRI][hapmap];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2513727	0.84[CEU][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];0.85[TSI][hapmap];0.81[YRI][hapmap];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2513729	0.86[JPT][hapmap]
rs2513730	0.84[CEU][hapmap];0.91[JPT][hapmap];0.81[YRI][hapmap]
rs2514181	0.84[CEU][hapmap];0.91[JPT][hapmap];0.81[YRI][hapmap];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2514186	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2514187	0.84[CEU][hapmap];0.98[GIH][hapmap];0.91[JPT][hapmap];0.82[TSI][hapmap];0.81[YRI][hapmap];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2514202	0.84[CEU][hapmap];0.91[JPT][hapmap]
rs2839749	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2866830	0.91[JPT][hapmap];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3853677	0.80[JPT][hapmap]
rs3974323	0.88[CEU][hapmap];0.83[CHB][hapmap];0.84[CHD][hapmap];0.89[GIH][hapmap];0.83[JPT][hapmap];0.81[TSI][hapmap]
rs4272801	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4939174	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4939175	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4939176	0.94[CEU][hapmap];0.87[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[TSI][hapmap];0.80[ASN][1000 genomes]
rs4939182	0.88[CEU][hapmap];0.83[CHB][hapmap];0.81[CHD][hapmap];0.89[GIH][hapmap];0.83[JPT][hapmap];0.81[TSI][hapmap]
rs59448383	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs59594813	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6591447	0.82[ASN][1000 genomes]
rs6591455	0.88[CEU][hapmap];0.82[CHB][hapmap];0.84[CHD][hapmap];0.89[GIH][hapmap];0.83[JPT][hapmap];0.81[TSI][hapmap]
rs7109726	0.88[CEU][hapmap];0.86[CHB][hapmap];0.83[JPT][hapmap]
rs7110748	0.88[CEU][hapmap];0.82[CHB][hapmap];0.82[JPT][hapmap]
rs7113065	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7117613	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7117711	0.87[CEU][hapmap];0.83[CHB][hapmap];0.81[CHD][hapmap];0.89[GIH][hapmap];0.83[JPT][hapmap];0.81[TSI][hapmap]
rs7118536	0.94[CEU][hapmap];0.87[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[TSI][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7126858	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7952724	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs896300	0.87[CEU][hapmap]
rs921132	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs921134	0.84[CEU][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];0.85[TSI][hapmap];0.81[YRI][hapmap];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs921135	0.84[CEU][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];0.85[TSI][hapmap];0.84[YRI][hapmap];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs938012	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs976429	0.94[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs976430	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044030	chr11:57073395-58035564	Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	136 gene(s)	inside rSNPs	diseases
2	nsv541047	chr11:57073395-58035564	Active TSS Enhancers Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	136 gene(s)	inside rSNPs	diseases
3	nsv1054205	chr11:57544264-58358509	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
4	nsv897589	chr11:57623815-58052357	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
5	esv2761678	chr11:57768288-57810886	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:57791200-57798200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr11:57792000-57795400	Weak transcription	Colonic Mucosa	Colon
3	chr11:57792000-57811400	Weak transcription	Right Atrium	heart
4	chr11:57792200-57795400	Weak transcription	Left Ventricle	heart
5	chr11:57792200-57795400	Weak transcription	Pancreas	Pancrea
6	chr11:57792400-57796800	Weak transcription	Esophagus	oesophagus
7	chr11:57792600-57796400	Weak transcription	HSMMtube	muscle
8	chr11:57792800-57795600	Weak transcription	Spleen	Spleen
9	chr11:57792800-57796600	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr11:57793000-57796000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr11:57793200-57795600	Weak transcription	Duodenum Mucosa	Duodenum
12	chr11:57793400-57795600	Weak transcription	Psoas Muscle	Psoas
13	chr11:57794400-57795400	Enhancers	Muscle Satellite Cultured Cells	--
14	chr11:57794400-57797000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr11:57794400-57797200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr11:57794400-57797800	Enhancers	NHLF	lung
17	chr11:57794600-57796000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr11:57794600-57796200	Enhancers	HepG2	liver
19	chr11:57794600-57797000	Enhancers	Placenta	Placenta
20	chr11:57794600-57797000	Enhancers	Skeletal Muscle Male	skeletal muscle
21	chr11:57794600-57797000	Enhancers	Osteobl	bone
22	chr11:57794600-57797400	Enhancers	Fetal Lung	lung
23	chr11:57794800-57797800	Enhancers	Adipose Nuclei	Adipose
24	chr11:57795000-57796600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr11:57795200-57795800	Enhancers	Lung	lung
26	chr11:57795200-57797000	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland

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