Variant report

Variant	rs921132
Chromosome Location	chr11:57795201-57795202
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	GATA3	chr11:57794931-57795278	T-47D	breast:	n/a	chr11:57795132-57795140
2	RCOR1	chr11:57794428-57795623	IMR90	lung:	n/a	n/a
3	FOS	chr11:57794897-57795220	MCF10A-Er-Src	breast:	n/a	n/a
4	STAT3	chr11:57794742-57795314	MCF10A-Er-Src	breast:	n/a	n/a
5	GATA3	chr11:57794828-57795375	T-47D	breast:	n/a	chr11:57795132-57795140
6	FOS	chr11:57794861-57795229	MCF10A-Er-Src	breast:	n/a	n/a
7	STAT3	chr11:57794802-57795234	MCF10A-Er-Src	breast:	n/a	n/a
8	STAT3	chr11:57794817-57795283	MCF10A-Er-Src	breast:	n/a	n/a
9	FOS	chr11:57794895-57795234	MCF10A-Er-Src	breast:	n/a	n/a
10	GATA2	chr11:57794929-57795260	HUVEC	blood vessel:	n/a	chr11:57795132-57795140
11	CEBPB	chr11:57794716-57795280	IMR90	lung:	n/a	n/a

Variant related genes	Relation type
RNU6-899P	TF binding region
OR6Q1	TF binding region

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs1013447	0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10750877	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10792126	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10792127	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10792128	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10792129	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10792130	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10896689	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10896690	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10896692	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11229194	0.87[ASN][1000 genomes]
rs11229195	0.87[ASN][1000 genomes]
rs11229221	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs11229236	0.84[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs11229237	0.84[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs1123196	0.85[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs1123306	0.85[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs11512733	0.81[ASN][1000 genomes]
rs1545459	0.85[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs1562863	0.85[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs2100110	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2167357	0.85[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs2218598	0.85[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs2441950	0.81[ASN][1000 genomes]
rs2441958	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2441960	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2441961	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2441972	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2441977	0.85[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs2441979	0.85[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs2443445	0.85[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs2443449	0.82[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs2443450	0.85[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs2513705	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2513713	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2513726	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2513727	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2513728	0.85[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs2513729	0.85[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs2513730	0.83[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs2514181	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2514186	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2514187	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2514191	0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2514199	0.85[AFR][1000 genomes]
rs2514202	0.83[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs2866830	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34243081	0.81[ASN][1000 genomes]
rs3851119	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4938883	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4939174	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7111942	0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7119421	0.84[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs7125209	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs896300	0.85[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs921133	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs921134	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs921135	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs971066	0.85[AFR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044030	chr11:57073395-58035564	Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	136 gene(s)	inside rSNPs	diseases
2	nsv541047	chr11:57073395-58035564	Active TSS Enhancers Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	136 gene(s)	inside rSNPs	diseases
3	nsv1054205	chr11:57544264-58358509	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
4	nsv897589	chr11:57623815-58052357	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
5	esv2761678	chr11:57768288-57810886	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:57791200-57798200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr11:57792000-57795400	Weak transcription	Colonic Mucosa	Colon
3	chr11:57792000-57811400	Weak transcription	Right Atrium	heart
4	chr11:57792200-57795400	Weak transcription	Left Ventricle	heart
5	chr11:57792200-57795400	Weak transcription	Pancreas	Pancrea
6	chr11:57792400-57796800	Weak transcription	Esophagus	oesophagus
7	chr11:57792600-57796400	Weak transcription	HSMMtube	muscle
8	chr11:57792800-57795600	Weak transcription	Spleen	Spleen
9	chr11:57792800-57796600	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr11:57793000-57796000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr11:57793200-57795600	Weak transcription	Duodenum Mucosa	Duodenum
12	chr11:57793400-57795600	Weak transcription	Psoas Muscle	Psoas
13	chr11:57794400-57795400	Enhancers	Muscle Satellite Cultured Cells	--
14	chr11:57794400-57797000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr11:57794400-57797200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr11:57794400-57797800	Enhancers	NHLF	lung
17	chr11:57794600-57796000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr11:57794600-57796200	Enhancers	HepG2	liver
19	chr11:57794600-57797000	Enhancers	Placenta	Placenta
20	chr11:57794600-57797000	Enhancers	Skeletal Muscle Male	skeletal muscle
21	chr11:57794600-57797000	Enhancers	Osteobl	bone
22	chr11:57794600-57797400	Enhancers	Fetal Lung	lung
23	chr11:57794800-57797800	Enhancers	Adipose Nuclei	Adipose
24	chr11:57795000-57796600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr11:57795200-57795800	Enhancers	Lung	lung
26	chr11:57795200-57797000	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland

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