Variant report

Variant	rs10896690
Chromosome Location	chr11:57793423-57793424
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs10750876	0.85[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs10750877	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10750878	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10750879	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10792121	0.85[ASN][1000 genomes]
rs10792122	0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs10792126	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10792127	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10792128	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10792129	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10792130	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10792131	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10792132	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10896674	0.80[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs10896675	0.80[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs10896689	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10896692	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10896693	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10896696	0.85[ASN][1000 genomes]
rs11229221	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1123307	0.85[ASN][1000 genomes]
rs1510419	0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs1510421	0.83[ASN][1000 genomes]
rs1848882	0.80[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs1848883	0.80[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs1868043	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2003375	0.85[ASN][1000 genomes]
rs2089748	0.85[ASN][1000 genomes]
rs2167358	0.85[ASN][1000 genomes]
rs2441958	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2441960	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2441961	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2513705	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2513713	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2513726	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2513727	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2514181	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2514186	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2514187	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2839749	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2866830	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4272801	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4939174	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4939175	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4939176	0.85[ASN][1000 genomes]
rs59448383	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs59594813	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7113065	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7117613	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7118536	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7126858	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7924376	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs7924454	0.85[ASN][1000 genomes]
rs7952724	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs921132	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs921133	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs921134	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs921135	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs938012	0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs976429	0.85[ASN][1000 genomes]
rs976430	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044030	chr11:57073395-58035564	Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	136 gene(s)	inside rSNPs	diseases
2	nsv541047	chr11:57073395-58035564	Active TSS Enhancers Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	136 gene(s)	inside rSNPs	diseases
3	nsv1054205	chr11:57544264-58358509	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
4	nsv897589	chr11:57623815-58052357	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
5	esv2761678	chr11:57768288-57810886	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:57787800-57794600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr11:57791200-57798200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr11:57792000-57795400	Weak transcription	Colonic Mucosa	Colon
4	chr11:57792000-57811400	Weak transcription	Right Atrium	heart
5	chr11:57792200-57794400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr11:57792200-57794600	Weak transcription	Osteobl	bone
7	chr11:57792200-57795400	Weak transcription	Left Ventricle	heart
8	chr11:57792200-57795400	Weak transcription	Pancreas	Pancrea
9	chr11:57792400-57793800	Enhancers	Adipose Nuclei	Adipose
10	chr11:57792400-57794400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr11:57792400-57794400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr11:57792400-57794600	Weak transcription	Fetal Lung	lung
13	chr11:57792400-57796800	Weak transcription	Esophagus	oesophagus
14	chr11:57792600-57793600	Enhancers	Skeletal Muscle Male	skeletal muscle
15	chr11:57792600-57794400	Weak transcription	Muscle Satellite Cultured Cells	--
16	chr11:57792600-57794400	Weak transcription	NHLF	lung
17	chr11:57792600-57794600	Weak transcription	Placenta	Placenta
18	chr11:57792600-57794600	Weak transcription	HSMM	muscle
19	chr11:57792600-57796400	Weak transcription	HSMMtube	muscle
20	chr11:57792800-57794600	Weak transcription	Lung	lung
21	chr11:57792800-57794600	Weak transcription	HepG2	liver
22	chr11:57792800-57795600	Weak transcription	Spleen	Spleen
23	chr11:57792800-57796600	Weak transcription	Skeletal Muscle Female	skeletal muscle
24	chr11:57793000-57796000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr11:57793200-57795600	Weak transcription	Duodenum Mucosa	Duodenum
26	chr11:57793400-57795600	Weak transcription	Psoas Muscle	Psoas

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