Variant report

Variant	rs2866830
Chromosome Location	chr11:57792221-57792222
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs1013447	0.95[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10750877	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10750878	0.83[CEU][hapmap];0.91[JPT][hapmap]
rs10792126	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10792127	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10792128	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10792129	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10792130	0.94[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10896689	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10896690	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10896692	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10896696	0.84[CEU][hapmap];0.91[JPT][hapmap]
rs11229194	0.82[ASN][1000 genomes]
rs11229195	0.82[ASN][1000 genomes]
rs11229221	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11229236	0.95[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap]
rs11229237	0.94[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap]
rs1123196	0.95[CEU][hapmap];1.00[JPT][hapmap]
rs1123307	0.84[CEU][hapmap];0.91[JPT][hapmap]
rs11512733	0.88[ASN][1000 genomes]
rs1374570	0.83[JPT][hapmap]
rs1868043	0.84[CEU][hapmap];0.91[JPT][hapmap]
rs2003375	0.84[CEU][hapmap];0.91[JPT][hapmap]
rs2100110	0.95[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2167357	0.95[CEU][hapmap]
rs2167358	0.84[CEU][hapmap];0.91[JPT][hapmap]
rs2218598	0.95[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap]
rs2441950	0.90[CHB][hapmap];0.91[JPT][hapmap];0.89[ASN][1000 genomes]
rs2441958	0.81[EUR][1000 genomes]
rs2441960	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2441961	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2441972	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2441979	0.94[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap]
rs2513705	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2513713	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2513726	0.94[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2513727	0.94[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2513729	0.95[JPT][hapmap]
rs2513730	0.95[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap]
rs2514181	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2514186	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2514187	0.94[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2514191	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2514202	0.95[CEU][hapmap];1.00[JPT][hapmap]
rs34243081	0.88[ASN][1000 genomes]
rs3851119	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4938883	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4939174	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4939176	0.83[CEU][hapmap];0.91[JPT][hapmap]
rs7111942	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7118536	0.83[CEU][hapmap];0.91[JPT][hapmap]
rs7125209	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs896300	0.94[CEU][hapmap]
rs921132	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs921133	0.91[JPT][hapmap];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs921134	0.94[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs921135	0.94[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs976429	0.84[CEU][hapmap];0.91[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044030	chr11:57073395-58035564	Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	136 gene(s)	inside rSNPs	diseases
2	nsv541047	chr11:57073395-58035564	Active TSS Enhancers Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	136 gene(s)	inside rSNPs	diseases
3	nsv1054205	chr11:57544264-58358509	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
4	nsv897589	chr11:57623815-58052357	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
5	esv2761678	chr11:57768288-57810886	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:57787800-57794600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr11:57790200-57792600	Enhancers	Rectal Mucosa Donor 29	rectum
3	chr11:57790200-57792800	Enhancers	Fetal Muscle Leg	muscle
4	chr11:57790800-57792800	Enhancers	Skeletal Muscle Female	skeletal muscle
5	chr11:57791000-57792400	Enhancers	Fetal Lung	lung
6	chr11:57791200-57792600	Enhancers	NHLF	lung
7	chr11:57791200-57792800	Enhancers	Spleen	Spleen
8	chr11:57791200-57793200	Enhancers	Duodenum Mucosa	Duodenum
9	chr11:57791200-57798200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr11:57791400-57792400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr11:57791400-57792400	Enhancers	Sigmoid Colon	Sigmoid Colon
12	chr11:57791400-57792600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr11:57791400-57792600	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
14	chr11:57791400-57792800	Enhancers	Fetal Muscle Trunk	muscle
15	chr11:57791400-57792800	Enhancers	HepG2	liver
16	chr11:57791400-57792800	Enhancers	HUVEC	blood vessel
17	chr11:57791400-57793400	Enhancers	Breast Myoepithelial Primary Cells	Breast
18	chr11:57791400-57793400	Enhancers	Psoas Muscle	Psoas
19	chr11:57791600-57792400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr11:57791600-57792400	Enhancers	Esophagus	oesophagus
21	chr11:57791600-57792600	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
22	chr11:57791600-57792600	Enhancers	Placenta	Placenta
23	chr11:57791600-57792600	Enhancers	HSMMtube	muscle
24	chr11:57791600-57792800	Enhancers	Lung	lung
25	chr11:57792000-57792400	Enhancers	Cortex derived primary cultured neurospheres	brain
26	chr11:57792000-57792400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr11:57792000-57792400	Enhancers	Brain Germinal Matrix	brain
28	chr11:57792000-57792600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr11:57792000-57795400	Weak transcription	Colonic Mucosa	Colon
30	chr11:57792000-57811400	Weak transcription	Right Atrium	heart
31	chr11:57792200-57792400	Flanking Active TSS	Muscle Satellite Cultured Cells	--
32	chr11:57792200-57792400	Flanking Active TSS	Adipose Nuclei	Adipose
33	chr11:57792200-57792600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
34	chr11:57792200-57792600	Enhancers	HSMM	muscle
35	chr11:57792200-57794400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr11:57792200-57794600	Weak transcription	Osteobl	bone
37	chr11:57792200-57795400	Weak transcription	Left Ventricle	heart
38	chr11:57792200-57795400	Weak transcription	Pancreas	Pancrea

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links