Variant report

Variant	rs10792129
Chromosome Location	chr11:57802672-57802673
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10750876	0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs10750877	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10750878	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10750879	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10792121	0.82[ASN][1000 genomes]
rs10792122	0.80[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs10792126	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10792127	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10792128	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10792130	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10792131	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10792132	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10896674	0.80[ASN][1000 genomes]
rs10896675	0.80[ASN][1000 genomes]
rs10896689	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10896690	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10896692	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10896693	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10896696	0.88[ASN][1000 genomes]
rs11229221	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1123307	0.88[ASN][1000 genomes]
rs1510421	0.80[ASN][1000 genomes]
rs1848883	0.80[ASN][1000 genomes]
rs1868043	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2003375	0.88[ASN][1000 genomes]
rs2089748	0.82[ASN][1000 genomes]
rs2167358	0.88[ASN][1000 genomes]
rs2441958	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2441960	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2441961	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2513705	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2513713	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2513726	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2513727	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2514181	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2514186	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2514187	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2839749	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2866830	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4272801	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4939174	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4939175	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4939176	0.88[ASN][1000 genomes]
rs59448383	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs59594813	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7113065	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7117613	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7118536	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7126858	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7924376	0.80[ASN][1000 genomes]
rs7924454	0.82[ASN][1000 genomes]
rs7952724	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs921132	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs921133	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs921134	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs921135	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs976429	0.88[ASN][1000 genomes]
rs976430	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044030	chr11:57073395-58035564	Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	136 gene(s)	inside rSNPs	diseases
2	nsv541047	chr11:57073395-58035564	Active TSS Enhancers Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	136 gene(s)	inside rSNPs	diseases
3	nsv1054205	chr11:57544264-58358509	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
4	nsv897589	chr11:57623815-58052357	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
5	esv2761678	chr11:57768288-57810886	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:57792000-57811400	Weak transcription	Right Atrium	heart
2	chr11:57799200-57808200	Weak transcription	Pancreas	Pancrea
3	chr11:57799400-57808400	Weak transcription	Lung	lung

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