Variant report

Variant	rs7924454
Chromosome Location	chr11:57758238-57758239
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10750876	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10792119	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10792120	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10792121	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10792122	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10792126	0.82[ASN][1000 genomes]
rs10792128	0.82[ASN][1000 genomes]
rs10792129	0.82[ASN][1000 genomes]
rs10896663	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10896668	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10896671	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10896672	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10896674	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10896675	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10896690	0.85[ASN][1000 genomes]
rs10896692	0.82[ASN][1000 genomes]
rs11229194	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11229195	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11229221	0.84[ASN][1000 genomes]
rs11512733	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12281690	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1317828	0.87[EUR][1000 genomes]
rs1510419	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1510421	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1848880	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1848882	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1848883	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2089748	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2136726	0.87[EUR][1000 genomes]
rs2866828	0.87[EUR][1000 genomes]
rs2866829	0.87[EUR][1000 genomes]
rs34243081	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4272801	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4939170	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6591447	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7924376	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs938012	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9795237	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:20 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044030	chr11:57073395-58035564	Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	136 gene(s)	inside rSNPs	diseases
2	nsv541047	chr11:57073395-58035564	Active TSS Enhancers Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	136 gene(s)	inside rSNPs	diseases
3	nsv1054205	chr11:57544264-58358509	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
4	nsv897589	chr11:57623815-58052357	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
5	nsv328	chr11:57744748-57789940	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island lncRNA	2 gene(s)	inside rSNPs	diseases
6	esv3510955	chr11:57753826-57762624	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
7	esv3510957	chr11:57753826-57762624	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
8	esv3510956	chr11:57754026-57762724	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
9	esv1793974	chr11:57754243-57758808	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
10	nsv498759	chr11:57754444-57762114	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
11	esv18668	chr11:57755622-57761480	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
12	esv3512188	chr11:57756426-57762624	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
13	esv3512189	chr11:57756426-57762624	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
14	esv1805062	chr11:57756568-57761372	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
15	esv1809511	chr11:57756568-57761372	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
16	esv1814272	chr11:57756568-57761372	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
17	esv1814910	chr11:57756568-57761372	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
18	esv1813771	chr11:57756568-57767699	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
19	esv3474287	chr11:57756676-57763574	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
20	esv3474298	chr11:57756676-57763574	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:57749800-57758800	Weak transcription	HepG2	liver

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